RNA id: TU153763


Basic Information

Item Value
RNA id TU153763
length 1349
RNA type TUCP
GC content 0.62
exon number 4
gene id AMCG00002350
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11848470 ~ 11854891 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagagggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaccggGGCTGAGGAAGAACGGGTTTCTCCACCGGTCTCCCTGCTCGGTACCCATGCCGTCTCTGCCACCGAGCACCGGGGACACCGTGGCGCCGCTCTGTGTCATCCCTGCGCCGTGAAAACAGACATTAGACCCGGAGAGATCCCCCAGCCCAGCCGGGGGAGGGAGGCAGCAGGGGGGCGGGAACTGGGCTCTTGCTATGTGTGCTGGTTTTCTGAATGTTGTCGGAATGCAATAGAATAgttaatcatattattattaatagttgcatTAGTAGTAACACAGAGCCCGGATACTGTGGAGCGCTTTTCGCCGTGTCGCCCTTCTTCTCCGCCTTCCTGTGCTGGTTCTGTCCGGAACCAGCCGGAGCCGAACCACTGCAGCGCCCGAACCGGGGGGAGCGGAGCCCGTGACAGAGGCGGCGGGAGAGCGAGCGAGGGGAACCGGAGAGCCGGCCCTGAATGTCGCCTGGCACGGCATCCCGCGCCTGCCAGCCCGGTGCGTCTGGGAGGTTCACCGTGTAAGGGAGCGAAGTCTCCATGCCCGTCTCCCCCGGCTGGAAGGGACCACACTGTGCCACCGTCAGCGGACCCGAGGGGCAGCAGCGGGGCAgcgggagagagggacaggcgGCTGGGACGGATTGATGCCTATGGGCTGCAACACCATGATCTTTATGGTCCTCGGGGCTTCCATTGTTATGGCACCATGTCCACTATGTGATCCCCTATGACGGAGATCAGTCTCTGGTCGACTCCTCTGAGAACTACTTTGTGAGCGACAGTGTGACGAAGCAGGAGTTGGACCTGATGCTGGGGCTGCTGCTTGGCTTCTGCTTCAGCTGGCTGCTGGTGTGGCTGGACGGGGCGCTGCACTGCGCTGTGAGGGCCTGGAGGGCCAGCCGCCGCTATGactccACCTCCTGGTCATGGCTGCCCAGGTTCTGCAGGTGGCGCGAGCTGCGGGGCAGGGGGGCGGTGCGCCAGTACGATGACTCCAGTGGGAACATGGTGCACATCAAACAGAAGCTGTACCACAATGGCCACCCCAGCCCCCGCCACCTCTGAGCCCCCCCCACAAGACAACCCACCCAGACTCCCCAACTCCTTCACACacacccccctgccccctcctGCCAGCCTGCCAGCCGAGACAGCTGTGTGGAATTGTGGCGTGGCGTGGCGTGGCGTGGCATGGGGTGGGTGTGGGGTATTTTTCTGTACTGGAACACAGAGCAGGAGAGGGAAGGATGGGTCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153762 lncRNA downstream 278 11847081 ~ 11848192 (-) True G122633
TU153761 lncRNA downstream 2799 11844392 ~ 11845671 (-) True G122632
TU153668 lncRNA downstream 129501 11718530 ~ 11718969 (-) True G122551
TU153665 lncRNA downstream 132325 11714409 ~ 11716145 (-) True G122548
TU153646 lncRNA downstream 220035 11601972 ~ 11628435 (-) True G122530
TU153766 lncRNA upstream 2500 11857391 ~ 11859325 (-) True G122636
TU153748 lncRNA upstream 8012 11862903 ~ 11864056 (-) True G122621
TU153768 lncRNA upstream 14716 11869607 ~ 11871379 (-) True AMCG00002351
TU153878 lncRNA upstream 188424 12043315 ~ 12045019 (-) True G122726
TU153975 lncRNA upstream 341029 12195920 ~ 12243914 (-) False G122801
AMCG00002349 mRNA downstream 14647 11830472 ~ 11833823 (-) True AMCG00002349
AMCG00002347 mRNA downstream 27039 11815327 ~ 11821431 (-) True AMCG00002347
AMCG00002352 mRNA downstream 42831 11804054 ~ 11805639 (-) True AMCG00002352
AMCG00002346 mRNA downstream 44726 11800441 ~ 11803744 (-) True AMCG00002346
AMCG00002348 mRNA downstream 57734 11787502 ~ 11790736 (-) True AMCG00002348
AMCG00002345 mRNA upstream 9723 11864614 ~ 11869352 (-) True AMCG00002345
AMCG00002351 mRNA upstream 16213 11871104 ~ 11872276 (-) False AMCG00002351
AMCG00002357 mRNA upstream 27182 11882073 ~ 11892699 (-) True AMCG00002357
AMCG00002358 mRNA upstream 51019 11905910 ~ 11913015 (-) True AMCG00002358
AMCG00002359 mRNA upstream 58219 11913110 ~ 11918100 (-) True AMCG00002359
TU153720 other downstream 114146 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 163381 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 321115 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1995395 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 2015246 9831911 ~ 9833224 (-) True AMCG00002276
TU153773 other upstream 16971 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 140937 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1173306 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 1173306 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 1794337 13649228 ~ 13654236 (-) False AMCG00002421

Expression Profile