AMCG00002421 (sec61b,LOC102796100)


Basic Information

Item Value
gene id AMCG00002421
gene name sec61b,LOC102796100
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13649227 ~ 13654247 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002421
TGTCGTGGCCTGTTTAGCGGATCGTCATCCTTCCGAGAGCTCCTCTTCGTTTGGTGTTTGCAGGCAGGAGAGAAGACCATTAACCGGGCTGGGAACGGACGACATACCGAGGGACAGCACGATCACCACCGACTATCATCTGTAACCCTTCCGAGAACTCATAAACATGCCTGGTCCAGCTGCAAGTGCTACCAATGTGGGCGCCTCGAGCCGCTCCCCCAGCAAAGCAGTGGCCCCCCGAGCTGCGGGCTCCACCGTCAGACAGAGGAAGGCCACCAGCAGTGGGACGAGGAGTGCGGGCCGAGGGGCAGCCTCCGCAGGTACTGGGGGCATGTGGCGCTTCTACACTGAGGACTCGCCCGGGCTCAAAGTGGGCCCAGTTCCTGTGCTGGTCATGAGTCTTCTCTTCATTGCGTCCGTGTTCATGCTGCACATCTGGGGGAAATACACCCGCTCATGAACACGCACGCATGCACCCCCGCCTTCCCTCCCCAACTGGCTTCTTAACTCATTGGACTTGGACCAAACTCTGCGGAAGATTTTGAACCCCCTGAAAACAGGACATCCACACTGTAACTCTGCCCTCTGCTTGACTTCAGACCGGGAAATTGAACACTACCATCCCAAACCTCGCtgtttttgaatatttcatGAAAGAAGTTTATAGATTATTTAATCCCCCCTctgatttttatcattttaatttgttctcgTTTTCCTCTACATCCCATCTTGATTTAATGCTTCTGTTTTCAGTCCAAACtagatttcagtttttgtgaACCTCATTTGTACAAACaatgtattacaataaaaaacgTTTCTACAAAATCTAAT
>TU154299
GTTTAGCGGATCGTCATCCTTCCGAGAGCTCCTCTTCGTTTGGTGTTTGCAGGCAGGAGAGAAGACCATTAACCGGGCTGGGAACGGACGACATACCGAGGGACAGCACGATCACCACCGACTATCATCTGTAACCCTTCCGAGAACTCATAAACATGCCTGGTCCAGCTGCAAGTGCTACCAATGTGGGCGCCTCGAGCCGCTCCCCCAGCAAAGCAGTGGCCCCCCGAGCTGCGGGCTCCACCGTCAGACAGAGGAAGGCCACCAGCAGTGGGACGAGGAGTGCGGGCCGAGGGGCAGCCTCCGCAGGTACTGGGGGCATGTGGCGCTTCTACACTGAGGACTCGCCCGGGCTCAAAGTGGGCCCAGTTCCTGTGCTGGTCATGAGTCTTCTCTTCATTGCGTCCGTGTTCATGCTGCACATCTGGGGGAAATACACCCGCTCATGAACACGCACGCATGCACCCCCGCCTTCCCTCCCCAACTGGCTTCTTAACTCATTGGACTTGGACCAAACTCTGCGGAAGATTTTGAACCCCCTGAAAACAGGACATCCACACTGTAACTCTGCCCTCTGCTTGACTTCAGACCGGGAAATTGAACACTACCATCCCAAACCTCGCtgtttttgaatatttcatGAAAGAAGTTTATAGATTATTTAATCCCCCCTctgatttttatcattttaatttgttctcgTTTTCCTCTACATCCCATCTTGATTTAATGCTTCTGTTTTCAGTCCAAACtagatttcagtttttgtgaACCTCATTTGTACAAACaatgtattacaataaaaaacgTTTCTACAAAATCTAA

Function

symbol description
sec61b Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, translocation and posttranslational protein targeting to membrane, translocation. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be part of Sec61 translocon complex. Predicted to be active in membrane. Is expressed in axis; epithalamus; hatching gland; notochord; and polster. Orthologous to human SEC61B (SEC61 translocon subunit beta).

NR:

description
PREDICTED: protein transport protein Sec61 subunit beta-like

GO: NA

KEGG:

id description
K09481 SEC61B, SBH2; protein transport protein SEC61 subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002421 True 837 mRNA 0.51 4 13649227 13654247
TU154299 False 825 TUCP 0.51 4 13649228 13654236

Neighbor

gene id symbol gene type direction distance location
AMCG00002420 NA coding downstream 78469 13537482 ~ 13570758 (-)
AMCG00002419 NA coding downstream 117474 13514324 ~ 13531753 (-)
AMCG00002417 LOC106605926,LOC106594359 coding downstream 170351 13458483 ~ 13478876 (-)
AMCG00002416 NA coding downstream 218843 13414300 ~ 13430384 (-)
AMCG00002415 NA coding downstream 238097 13406352 ~ 13411130 (-)
AMCG00002425 glipr2 coding upstream 17102 13671349 ~ 13678716 (-)
AMCG00002428 NA coding upstream 24525 13678772 ~ 13691226 (-)
AMCG00002426 galnt1 coding upstream 74363 13728610 ~ 13741394 (-)
AMCG00002427 galnt1 coding upstream 102638 13756885 ~ 13758919 (-)
AMCG00002431 NA coding upstream 114168 13768415 ~ 13772309 (-)
G123027 NA non-coding downstream 157610 13487114 ~ 13491617 (-)
G123014 NA non-coding downstream 192168 13455085 ~ 13457059 (-)
G122991 NA non-coding downstream 236931 13411499 ~ 13412296 (-)
G122957 NA non-coding downstream 343632 13303152 ~ 13305595 (-)
G122956 NA non-coding downstream 346145 13302120 ~ 13303082 (-)
G123152 NA non-coding upstream 423997 14078244 ~ 14111201 (-)
G123175 NA non-coding upstream 888574 14542821 ~ 14543020 (-)
G123177 NA non-coding upstream 912000 14566247 ~ 14567067 (-)
G123178 NA non-coding upstream 932967 14587214 ~ 14588758 (-)
G123179 NA non-coding upstream 934562 14588809 ~ 14594542 (-)
G122862 NA other downstream 619821 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 1642875 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 1776365 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 1794336 11848470 ~ 11854891 (-)
G122597 NA other downstream 1914903 11731617 ~ 11734324 (-)
G123263 NA other upstream 1287013 14941260 ~ 14946311 (-)
G123585 NA other upstream 3181909 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 3303915 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 4035761 17690008 ~ 17706289 (-)
G123829 NA other upstream 4268205 17922452 ~ 17989465 (-)

Expression


Co-expression Network