AMCG00002415


Basic Information

Item Value
gene id AMCG00002415
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13406352 ~ 13411130 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002415
ctgacctctgacctcgaCACTGTCCGGTCGACGGCACAACACGGTTTTCCAGACGCGACATGGATGATATACTGAGGATAATGAAGGGATGTCAACCCGTGGAAAAAGTGGAACCCAAGATGGAAGACCTGATGGGTAAATTACGGAGAATGCAGAAAGCTAAAAGAGCCCTGGAAGAGGAGCTGAAAGATGCAGAGTGCCTCAGAAAGACCCTACAGGAGGAGCTGGATTCCTtgCACAAGGAGTGTACTCAAATGGATGAGagatacaaagaaaaagaagAGGCTTGCAAGGTTCAGCAGTTCAAATGTGAGGAACTAGAAGTTGACGCAAACAGGCAGTTGGAGATTCACAGTAAGAATAAGCAGCTGCTAGCAGAGTATACCTTTCAAATTCAGGAGACCAAATTAAAGCACCGAAAACAAAGGGTAAAGTTTGAAAACCAGCTTCAGCAACTGATGGAGCAACACAAGAATATGTTCTCTATATATtcTCCAGAAGGACTTCCCAGGGAAATTGAgaatattgaaaatatgaagTCCCAGCTATTAAAAGCTGAGCAAATGAAGCTGAAGCAGCTGAGCAGCCTTGCAGAGGAGATAAGACTAGCAGGATGTTCTGCAAAGGTGACCAATGACCCTGAAGAAAACTAATTTCAGACAAAAACTGCAGATGAACAGTAAGATTTAGTCTTTATATAAATCCAGGCAGCTTTCTTTTGCTATTTTTGGAAAGCATTGAGGTCTCCCAGTTGTTTTGACTGTTATCCAGTGAAGGATTTTGGTGTTTAAGACTTCCCACATACACACTGCCCTCTTTCTCCTAAATACTGTTCTACAATACAGTCTGTGTtttgggaaaatacattttggttttgaaTTGTTTGGGTTTATATATGGGTGTATGTCCTTTAAGACCTTTTTCATGACAGTATGAATGTTTTGTGCGGGAAAGGGTTTAtcttatttaattgcttttgtccCCCATTGATTTTGTCTCGGTCTCTGTGGTTGGCTAGCAGCACCTTCAGCGCACATCCCTCTGTGAAC

Function

GO: NA

KEGG:

id description
K19534 SYCE1; synaptonemal complex central element protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002415 True 1049 mRNA 0.42 10 13406352 13411130

Neighbor

gene id symbol gene type direction distance location
AMCG00002411 NA coding downstream 22297 13377167 ~ 13384055 (-)
AMCG00002410 setd2,LOC106606040,LOC107596709 coding downstream 36955 13332995 ~ 13369397 (-)
AMCG00002405 ccdc12,LOC102782761 coding downstream 156501 13238743 ~ 13249851 (-)
AMCG00002404 NA coding downstream 179208 13219608 ~ 13227144 (-)
AMCG00002403 nacad,LOC107579097 coding downstream 192549 13196825 ~ 13213803 (-)
AMCG00002416 NA coding upstream 3170 13414300 ~ 13430384 (-)
AMCG00002417 LOC106605926,LOC106594359 coding upstream 47353 13458483 ~ 13478876 (-)
AMCG00002419 NA coding upstream 103194 13514324 ~ 13531753 (-)
AMCG00002420 NA coding upstream 126352 13537482 ~ 13570758 (-)
AMCG00002425 glipr2 coding upstream 260219 13671349 ~ 13678716 (-)
G122957 NA non-coding downstream 100757 13303152 ~ 13305595 (-)
G122956 NA non-coding downstream 103270 13302120 ~ 13303082 (-)
G122955 NA non-coding downstream 106234 13299523 ~ 13300118 (-)
G122954 NA non-coding downstream 107678 13297432 ~ 13298674 (-)
G122953 NA non-coding downstream 108998 13296904 ~ 13297354 (-)
G122991 NA non-coding upstream 369 13411499 ~ 13412296 (-)
G123014 NA non-coding upstream 43955 13455085 ~ 13457059 (-)
G123027 NA non-coding upstream 75984 13487114 ~ 13491617 (-)
G123152 NA non-coding upstream 667114 14078244 ~ 14111201 (-)
G123175 NA non-coding upstream 1131691 14542821 ~ 14543020 (-)
G122862 NA other downstream 376946 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 1400000 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 1533490 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 1551461 11848470 ~ 11854891 (-)
G122597 NA other downstream 1672028 11731617 ~ 11734324 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 238097 13649227 ~ 13654247 (-)
G123263 NA other upstream 1530130 14941260 ~ 14946311 (-)
G123585 NA other upstream 3425026 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 3547032 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 4278878 17690008 ~ 17706289 (-)

Expression


Co-expression Network