AMCG00002417 (LOC106605926,LOC106594359)


Basic Information

Item Value
gene id AMCG00002417
gene name LOC106605926,LOC106594359
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13458483 ~ 13478876 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002417
ATGCTGAGCAGGGCTTTTTCCTATAATTTTGCCACAGTCAGTCGCAGGCCCGGCAAAGAGGCTTTAAGGATGGCGAACCTACTCCCCCTGTCCTCTGCGGACGCCACTCCACCCAGCCCACCCCCGCTGGGCTCGCAGGTTCACGCCGCCGCTGTGAATGGGGACAGGAGCACTCTGCAGAGGCTCATCACAGCGGACCCCTCTCTGCGGGATAGGGAGGACCAGTTTGGACGGACTCCCCTGATGTACTGCGTGCTGGCGGATCGGCTGGACTGTGCTGAGGCCCTGCTGAAGGCTGGAGCTCACGTCAACAAGGCCGACCGCAGCCAGAGGACAGCACTTCACTTGGCTGCTCAGAAGGGCAATATGCGGTTCATGAAGCTGCTGCTGGCACGCCGGGCCAACTGGCTACAGAAGGACCTAGAGGAGATGACTCCTCTGCACCTGGCCACCCGGCACCGCAGCCCCAAGTGCCTGGCCCTGCTGCTCAAGTACATGGCCCCCGGGGAGGTGGACACCCAGGACAAGAACAAGCAGACTGCCCTGCACTGGAGTGCCTACTACAACCACCCTGGCCACGTCAAACTGCTCATCAAACACGACTCCAACATCGGCATCCCTGACAGTGAGGGCAAGATCCCGCTGCACTGGGCCGCCCACAACAAGGACCCCAGCGCCACACACACTGTGCGCTGCATCCTGGAGGCTGCTCCGACAGAGTCCCTGCTGAACTGGCAGGACTACGAGGGCCGGACACCACTGCACTTTGCAGTGGCCGACGGGAACGAGGCCGTGGTGGCGGTGCTGACATCCTACGAAGGCTGCAGCGTCACGGCCTACGACAACCTGTTCCGCACACCGCTGCACTGGGCTGCACTGCTGGGTCACGCCCGAATCGTACACCTGCTTCTGGAGAGGAACACATCAGGCACCATCCCCTCAGACAGCCAGGGCAAGGGCAGCACTGATGTCATCAGGACCATGTTGGACCTGAAGTCCGACATCGATATCAATATGACCGACAAGTATGGGGGCACAGAGTGGCAAGACGGGAGTTCAGTTCCGGGCAATACTTGCGCCCTGGCGAGTGGCTTCCCGACGTCAGAGAGCTGTGTTCCGGCGACTGTGTTAAGGGCAATGCCACTGACGTCACTCAGAGCTGCCCTCACCCTGCACGCAGCAGCTCTCTCAGGTCACGTGACCATGGTGCATCTGCTCCTGGAGCACGGCGCCATGGTGGACGCCCTGGACATCCTGATGGAGAGCGGCATCTCCCCCAATGTCCAGGACCTGGCGGGCCGCACACCTCTGCAGTGTGCCGCCTACGGGGGCTACATCAGCTGCATGGCTGTGCTGATGGAGAACAGTGCTGACCCCAACATACAGGACCGTGAGGGCCGGACGGCGCTGCACTGGTCCTGCAACAACGGATACCTGGACGCAGTGAAGCTGCTGCTGGGGTACGGCGCCTTCCCCAACCACATGGAGCACAGCGAGGAGAGGTACACCCCTCTGGACTACGCGCTGCTGGGGGAGCACCAGGAGGTGACACAGTTCATGCTGGAACATGGCGCCCTGTCCATCGCCGCCATCCAAGACATCGCCGCCGCCTCCATCCAGGCCCTGTACAAGGGATACAAGGTGCGGCAGGCCTTCCGCGAGCGCAAGAACCTGCTGATGAGGCATGAGCAGCTGCGCAAGGACGCCGCCAAGAAGCGGGAGGAGGAGCAGCGGCGGCGGGAGGCGGAGCAGCAGGAGGCGTTGGGTGGAGCCAAGATGGGGCTGAAGACGCTGTCCCTCACAAACAGCCCGGCCCCCCACACCAAGCGCTGCCAGACACGGCCCCCCCAAGGCGAGGCACAGGCCCCCCCCCGAGGCAGAGAGCGCAGGAGCAGGTCTGCCAGGAGTGAGCTAGCAGGGCCCGTGCCCAGTGAGGCCCCCCAGTCCGTGCCCTCAGCCAACCCTGAGAAGGACAGTCCTCGTCCCCCCAGCTCCTCTGGGCACATCTCCAGAAAGCCCTCTGCCCCCTCAGGGAGGAGGTCTGTGGGCAGGGAGCAGAGCGAGAAGAAGGAGGAGCCTCTGCCAGGACTGGGGCGCAGCACAGGGCCCCCCCCGAAACTCAGCGAGGAGACCCTGAAGGCAGGAGTGAGGGCTCTGAACAGCGGCCGCCATTCCCCTGCAGGGTCCAGCAGGCCGGGCAGTGCCAAGCCGGGCATGCAGACCACTGTTCGGACACTCAGAGTGCCCACTCCCACAGGCACGCAGCTGCCCCCGCTGGCACCACGCTCCCTCAGGGGCAGGAGCTCGGGGGCAAGACCCCCACCCAGCCCGGCCTCCCCTCCCAGCAGAATCCTCTCTGCCCAGCCCTCCCCAGTCCCCCCGGGACCCTGGCACAGCGGCTGTGTGGAGCTGGTGCCCCTGGAGCTGCGTCTGCAGGTGGTGGAGCGCGAGAGGAACCGCAAGGAGCTGTTCAGGAGGAAGAACCAGGCGGCCAGTGCCATTCAGAGGGCCTGGAGGAGgttcCGTGTGCGTGGCCGGTTGAGGGCGGTGTTGGGCGGAGGCTCCCAGGAGGCGGAGTCAGCAGAGATGGCCTCCCTACTCATCCAGCTGCTGTGGGACAAAGCGCTCCCTCCTGACTCCATCTCCACACTGCAGAAGACCACACCCCCACACAAAGCCCAGCTCACCAGGGGCAGTGGGAGGCGGAGCTCCGTTCTTCAGAGCATCTACGCTCGACCCAGCAGTCCTCTCCCTCGCCCAATGCCTGCCGCTCCGAGTGTTGCTACAATCACAGCTGATAAGCCGCAGGTGTCGGCCGGTGCGGTGGCCTTTAGCAGGCATGAGCAGGTGCTGATGGGAGAGGGCTGGGGGCGGCTGCCAGCTCCAGCACACAGAGGCTGCCTTGTCCTCCACAGCCCTGCGGCCGCCGCACACAGCGCCCCCCTCCCAGGATGGCGCTGA

Function

NR:

description
PREDICTED: inversin-like, partial

GO: NA

KEGG:

id description
K19626 INVS; inversin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002417 True 2961 mRNA 0.65 17 13458483 13478876

Neighbor

gene id symbol gene type direction distance location
AMCG00002416 NA coding downstream 28099 13414300 ~ 13430384 (-)
AMCG00002415 NA coding downstream 47353 13406352 ~ 13411130 (-)
AMCG00002411 NA coding downstream 74428 13377167 ~ 13384055 (-)
AMCG00002410 setd2,LOC106606040,LOC107596709 coding downstream 89086 13332995 ~ 13369397 (-)
AMCG00002405 ccdc12,LOC102782761 coding downstream 208632 13238743 ~ 13249851 (-)
AMCG00002419 NA coding upstream 35448 13514324 ~ 13531753 (-)
AMCG00002420 NA coding upstream 58606 13537482 ~ 13570758 (-)
AMCG00002425 glipr2 coding upstream 192473 13671349 ~ 13678716 (-)
AMCG00002428 NA coding upstream 199896 13678772 ~ 13691226 (-)
AMCG00002426 galnt1 coding upstream 249734 13728610 ~ 13741394 (-)
G123014 NA non-coding downstream 1424 13455085 ~ 13457059 (-)
G122991 NA non-coding downstream 46187 13411499 ~ 13412296 (-)
G122957 NA non-coding downstream 152888 13303152 ~ 13305595 (-)
G122956 NA non-coding downstream 155401 13302120 ~ 13303082 (-)
G122955 NA non-coding downstream 158365 13299523 ~ 13300118 (-)
G123027 NA non-coding upstream 8238 13487114 ~ 13491617 (-)
G123152 NA non-coding upstream 599368 14078244 ~ 14111201 (-)
G123175 NA non-coding upstream 1063945 14542821 ~ 14543020 (-)
G123177 NA non-coding upstream 1087371 14566247 ~ 14567067 (-)
G123178 NA non-coding upstream 1108338 14587214 ~ 14588758 (-)
G122862 NA other downstream 429077 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 1452131 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 1585621 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 1603592 11848470 ~ 11854891 (-)
G122597 NA other downstream 1724159 11731617 ~ 11734324 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 170351 13649227 ~ 13654247 (-)
G123263 NA other upstream 1462384 14941260 ~ 14946311 (-)
G123585 NA other upstream 3357280 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 3479286 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 4211132 17690008 ~ 17706289 (-)

Expression


Co-expression Network