G122956


Basic Information

Item Value
gene id G122956
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13302120 ~ 13303082 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU154157
CTCGGCTGGCTTTCCTGCCCCCACCACAATCAGCTTGCCGTCCTCCAGGCCCACCAGGATGTGGCTGCTCTCCTTGGTCACTGAGACACTGCGTATCGGGAGCTTCAGGGCCAGAGGGGACACAATTGGCTGcaagctgcacacacacacacacacacacatgcacagacagagagaaatacACCCAGACACATGGTTAGAAAAGACATCATAGCTCAgagtgtaacagtgtgtgtgagagtgctaCAGAGTGAGGGAGTCAGAATGACACACAACTGTTTAACTGTGAGTGTCACTCTTGTTATGCCGCTATCAGTTACTTTCACATGTCTAATCTGTctttaattgtgtgtttcttaGCACTTCAGGCAAAAAGACAACTGATTTCATCCTACTGAATGAAGAGTGAGGGAACCACGAAATGCCTGCCTCCCAGCGTGTGGCCTATGGGTCGCAGCCCCCCGACGCTACTCACCTGTGCAGGTCTCTGATGTGCAGGTTGCCCTGTGCGGTGCCCAGGATTGTGAAGTCTTGCACCATGTACAGCGCTGTCACATGCTCCTCCAGAGACACAGACGCCAACCTCTTCCCATTGATGGAGTACAGATGGAGAGCGTACTtatcctggagagagagagggcgagacAGAGAGATATTAAACATAACCCTTAGTATTCATGACCATATATGTCATGCACAGCAGCCTGGTATATGGGAATAATATATTGTTGTCAGTTCTATTAAATGTacgttatatatgtatacacatcaCACTGTGCTGTGTAGTTCTGCTGTTGTGGTACCTTGCGTGTGCCCTGACCCTCAACAACAGTCTGGGTGAGGATGTAGCCCTCCATGCCTACTGCCAGCTCCGTCACGCTGCCCCCCAGACAGCCCTCGCACGGCGGACGCAGGCTGCGCAGAAACTGCCCGCGTCGGATACTGTGCACTATCACTGTGCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154157 True 963 lncRNA 0.51 1 13302120 13303082

Neighbor

gene id symbol gene type direction distance location
AMCG00002405 ccdc12,LOC102782761 coding downstream 52269 13238743 ~ 13249851 (-)
AMCG00002404 NA coding downstream 74976 13219608 ~ 13227144 (-)
AMCG00002403 nacad,LOC107579097 coding downstream 88317 13196825 ~ 13213803 (-)
AMCG00002397 NA coding downstream 116083 13182721 ~ 13186037 (-)
AMCG00002396 NA coding downstream 122345 13152368 ~ 13179775 (-)
AMCG00002410 setd2,LOC106606040,LOC107596709 coding upstream 29913 13332995 ~ 13369397 (-)
AMCG00002411 NA coding upstream 74085 13377167 ~ 13384055 (-)
AMCG00002415 NA coding upstream 103270 13406352 ~ 13411130 (-)
AMCG00002416 NA coding upstream 111218 13414300 ~ 13430384 (-)
AMCG00002417 LOC106605926,LOC106594359 coding upstream 155401 13458483 ~ 13478876 (-)
G122955 NA non-coding downstream 2002 13299523 ~ 13300118 (-)
G122954 NA non-coding downstream 3446 13297432 ~ 13298674 (-)
G122953 NA non-coding downstream 4766 13296904 ~ 13297354 (-)
G122951 NA non-coding downstream 7086 13294821 ~ 13295034 (-)
G122950 NA non-coding downstream 7971 13293750 ~ 13294149 (-)
G122957 NA non-coding upstream 70 13303152 ~ 13305595 (-)
G122991 NA non-coding upstream 108417 13411499 ~ 13412296 (-)
G123014 NA non-coding upstream 152003 13455085 ~ 13457059 (-)
G123027 NA non-coding upstream 184032 13487114 ~ 13491617 (-)
G123152 NA non-coding upstream 775162 14078244 ~ 14111201 (-)
G122862 NA other downstream 272714 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 1295768 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 1429258 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 1447229 11848470 ~ 11854891 (-)
G122597 NA other downstream 1567796 11731617 ~ 11734324 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 346145 13649227 ~ 13654247 (-)
G123263 NA other upstream 1638178 14941260 ~ 14946311 (-)
G123585 NA other upstream 3533074 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 3655080 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 4386926 17690008 ~ 17706289 (-)

Expression


Co-expression Network