AMCG00002403 (nacad,LOC107579097)


Basic Information

Item Value
gene id AMCG00002403
gene name nacad,LOC107579097
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13196825 ~ 13213803 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002403
ccccccctcccacccccactccAGCCTACGTCGCTGGATTTGCGATATCTGTTTGTGTTAACGGGGGGCTCCGCATCTCCACAGCGCCATGCCAGGGGAAGCAGCCCGGAGTACCGTGCCCACACCTGGCCTGGCCGAGGGAGAGGACACTGACAGGGGCATCCCAGGACCAGATATGACCCGGCACACCTCCAGCTCATCGGCCTCCACCCCCAGTGACTGCGCCTCCACACCCTCCCCCCTCACCCCTCCCAAGCTGTCCCCAGCAGGCAGCCCCCCGATCATGTCCCCCTTTGGGCCGCGGCTGCCAAAGGCCCAGCAAAGCTTCTCAGCTCTGCGCCCCCAGCCGGAGGGAGCTAGCTGTGACGGAGCATCTGATGGCAGGACAGGAAGAGTGCCTGGCAAGTACGGCAGGGGCCCCTGCAAGCGTGGGTATCAACCGATAAAGATGGAGCGCATCAAGGTGTTGACCGGCACAGAGGTGGAGAGCGACTATAAGGAGCCTGAGACTCTGGACACACGGGTGGTGATGGGGGAGGAGGCCCTGCTGAGGAACATGGAAGCGCAGAGGGACAGTCTGACAGGCAGCAAGGCCACAGATGAGGGCTGCCCACATCTACCCCCTGCAGTACCAGGGGAGGTCCAGGACAGGGCTCCCCAGCAGGCTCAGCTTGACACTGGCCAGGATAGCTCCTCTTCCCCCCAGGCTGAGAGCCTGACCCCACAGATGGAGCCAGGACAAGACACTGTTAGCCCAGTGCCCTGTACTGGTCAGGAATCCCAACCTGCAGACGCCGGGGTGTCTGACAGTAGTGGCCTGGGGGCAAAAGAGGGGGCAGAGCAGCTGCTATCTCAGGGTGAAGTGCCTTCCTTGTCATTTTCAGAGCCCCCCTTCATGGCTGAGCACCACAACGTCGACCCCCAGAAAGCCCCGGCCCTGGACCCCGACCTCTACTTCACTGCCCCCTCTACCCCCATCAAGATGGCCTACTCCTCAAACCTGAAGCAACAGTGGTACCCCAGCTCCCCCAGCTCCGGCTCTCCCCCCATTGAGTCCCCCGACCTCCCAGAGAGCGAGGGGTTGTGCTCCCCACCCACCTCCCCCTCTGGCTCCTACATCACAGCGGAGGGGGGTAGCTGGACCTCCTCCTGCACCTCCAACACATCCCCCTCCTGCTCCCCCAATTTGATTGCAGAGGGAGAGCTGCAAGAAGCTCCTGCCTGCTACGTGGAGTCCCTGTCTGAGATTGGGGACGAGCTCGGGGAGGACAGGCACAATGTAGACAAGGATGCCCCCAACTTATACAAACCTGATGGGCCAGGCCTGGTGGGGAGTGTTGGCTTTGTGGAGGGTGGGGAGAGGCTGAAGAGGAAGACATGTCGCCCCAGTTGGGTTACTGAGGATGTCTCCCCGACGCGGAGCAGCAGTGGCAGGAGTACAGCCTCAGAGGAGGAGTCAGGAGGGTCCCTGGAACAGCCAGATGAGCTAGAGACTGCCGAGCTCACTGCAGAAGAGGACCCAGAAGACCCAGACCAGGACCTGGACTTGCACGCCTGTGTTGCTGAGCATTTCGCCACCTTGGATGCCCCTCTCAGCCCCGAGGAGGACATCTCCCCAGAGCTGgcctcctctttctccttcaTGCCCCGGCTGGCAACAGCAGACACCGGCAGCCTGACCCCGGCCACGTGCTCCTCGGAGGTCTCTGACACCGACAACAACAGCCCCTATGGAGAGATGTCCTCCTCTGGCCTGGAGTACCCTGGCCTTTGTGGGCTGGGTGGCCTGGCGGATGAGCGCATGATCCCTGCCTCACTCCTGCCTTTCCATGCTAGCCTCATCTTTCAGGCGGACTCCATGGAGATCACGTTGTTCCCCACCGAGGATGGGCCAGGCAATGACGTGGATGCCTACGGAGccggggaggaggagggtgatGTGGACGAAGGGGAGGATGAAGAAGAGGAGGTGGAAGCGGAGGTGGAGGTAGAGGTGGAGGTAGCAgaggtggaggaagaggaggggaagTGCGTGGAAGACCCCAATGAGGAAGACACCTCTGCATCCTTCCTAAACTCCCTCTCTGAGACTTCCATCAATGAGGGCGTTGACGAGTCCTTCGCTTTCCAGGATGACACTGAAGAGTCTATTGACTCTGCCTCCTACAACGGGGATGAGGACGAGCGGCTGTACAGCACTGAAAGGCACGCTGAGCTGGCACACCGCTGCCCTGGTCCCGATGACCCCGCTGAGCTGGCAAACCGCTCCCCTGGCCCTAATGACTCCGCTGAGCTGGCACACCATTTCCCTGGCCCCAATGACCCTGCTGAGCTGGTACCACCCAAAGACCAGGAGTCCTCTAACTCTGGCAGCGAGAGTGAGATGGAGATTTCATCAGGCTCCTCTGATGCAGAGCAAGCCCAGAAAGAGACCGTCTTGGCCCCCAAGACCCATTCCAGTGGGAGCTCCTTCTCTCCATCAACCTCCACAGCCCAGGAGGTAGACAGCTTGACAGAGCAGCTGATGGAAAGTGCAGGAGAGGTGAGACCAGAGGTTACTTCACAGAAAGTTGCTTTGGAGAGTGAAACTGGAGAACAGTGTGCTGACACCTGTGTTGGGGCAGCTTATGAAGAACCATCTTCCCATTCAGATATATTAGAGACACTGGGTCAAGACCAAACAGACAAGAGTCTCCCTGTAGGAGAGCCAGCTCAAGCTGCTGGGGAAAGTGAAAGATGTTCCTCACCCCAGGAGAGCCATGCCATGTCAACTGTAGCTGCTGCGCTGGTCGAGGCATCCCTGGAGGCAGAGCTAGCTGATCAGCAGAATGCGAACAGTATGGAATTCAGCGACTTACAGGCAGGTCTGGATGGAACAGCCACCAATGACCTCAACAAGGGAATGCCTGTGTTATCGTACCCCAAAGACGAAAGAAGCCCCAGTAACATACCTGTCTCTGGAATGCCCGAAATCCCCTCCGATGTTGCAGATAACCTGGCTGTGACAGCCTCATATATCATGACATCTGAGTCCTCTCTAAACCAAGACAACCTGACTGAGAATCAGCGTTGCACTGATGAAGTTAGCTTGGACCCTCTTTATGTCTCCAGTGCCGCCTACAGCATGCTAGCCATTtcaccaaagaaagaaaactctGAAACCAATATCTCAGGAAGGGGAGCCTCCCCCGAGCTGTGGGGGTCAGGAGGGCCTGTGACTCTGGGAGAGTGCTGCGAGTACGAGGCAGAGAGCCTGTTGACGTGTGAGATAGCTGCTCGGGCGTGCAGGGAGCCTTTTGTCACCCCCAACATTGGGTCAATAGATGTTGCCCAATACCAAGaggacaacaacaactacaccctcaacaacaacaacagtgagCTCATGGAGGATGCCGCCCCAGACAACACCGACTATGAGACTGGTGTGCTCGAGTCCAATCTCTCCAACTGGAAATCTATAGAGGAGATCTCTGAggctgggggaggggaggatGGGAGCTCTCAGTTTGCAGAGGACGAGGACAACAACCTCCACGGTCCACACCGAGGAGTGCAGGATCAGGAGGGAGAGAAGCTCCACCAACAAGACCTGCCTACAGCTGCAGAggtggtgtgtggtgtgtttgACCCAGAAGAAAGCAGCTCACAATTCAGTTCCCCAGCTGATCCCCAATGTCTGCACTTCAATATCctttcagaagaagaaaataaagaaactaagAACTGCACCTCTCCTGCTTCAGCACAGGATAATGTTAGTATCCCTGAGGAATCAGTCACAAATATAACCAGCATTGAAGCAAGTGAAGAGGATTCTGAGCATGAGGTGTCTGAGGTCAGTTCAGTGAAAGAAGTGTCCAGACATATTGAAGATGCCACTCAAGAGCTGAGCAGAACTCAGCCTGTGAGCTCCGATTCAGTCCCAGAGGAAACCCCAGTGTGTGCCCTGCTCTCTGGAACTGAAACCCAAACTGAAAGAAATCTGGAGAACATCCAGGAACCCGCCAAACCAGACAGAACTGATTCCCCGGAGGAGTTTGTCGTTGAAAAGCAAAACTCTACACCATTCAACCGAGACGCACTTGAGAATGAAAAAGCGACAGACAATGAAGGGAACAGCCCCAAGTCTGAGCCTGTATTCAGTTTGCTTGGAGGATCTTTTGGTTTCTTCAATCCCAGACAAAGTGCTTGTGACAAGAAGCCTGAAGAATCTCCTTCTAGTATTCCTGTTTTGGGAAGCAAGGACACTGCTGTGACTTGCAAAGTTGAGGCAGGTCAGGCCAAACCAGAGGAATCAGCACACGAAAAGGCAAACAGAGACAATGCCAACAAGGGGCAAAAGACAAGCAGCACAGAGATGGGCACTGGCTCAGAAAGAGGGGATGAAAGAAGAGCAGAGTCTGACTCAGGTTTCCAGGAAGGAGAAAATCAACAAGAAAAGAGGAACAGTGAAGTGGTTAACAGACCAATCAATGAACCAAAGAAAGAGGCTGCCTTTGAAGAGAACGAGAACACTGAAGTCAACAGTGAGACTTGCATTGCTAATCAagacaacacacaaacagaggaCAAGGCCTCACCTCAGACAGACACCAATGAGGAAGTGAAGGATGTTTTCTCTCCtgaagaaagggatcaggaggAGGGACGAGAGATTGCTACTGCCCTTGAGACAGCAGACATTGGTTCCACAGAGCAGGAGGGTCCCTCTGAAAAGGAGACAAGTGACCAGCTCAGTAGAGAGGCCTCTATTGAACTAGAAGACTCTGGTGACAGCACCAAGGAAACAGCTGGTCCTGCTGATGCTGCACAAGAAGGACACAGCAGGAGTGTCAGTCCCTCCATACGATCTGAGTCAGACAAAGATGAAGGACTTGAAAGTGTTGCTGTGGAAACCACTTCCAGGTCACTAGGTGGCTGTGTGGAACTGGAACCCACTGTGGGAGGGCGAGAGGTGGAGGAAATCACAGAGGCTTCAGTCCTGGAAGAGCTGAATCGAAGTGTAGCTTCTAATGAGAGCGATCATGACGGGGCAACATCTGAGACAGGCACCGAATCACAGAAATGTGAAAGAGACCACAGTCCAGACAGTGTAACAGCTACACAAGGTCAGCCCACAGAGGCAATGGTGAAGCAGGAAGATGTGGAGAAGGTCAGTGCTCCTGTGAATTCTTGCGAGACAGGAGAAAATGCACAACCTAAGGAACAGCAAGATGCAAGGAGTGAGGTAAGGGTTGACTCGCTGAGGGTGACAGAGTCTGACAGCCAACCCTGCAGTGACACAGCAGAGGAGTTGAATCTTCAAGCCAGTAGAACCGATGTACCGATGGACTGTGCACCGCTCACAGAGATTCCCAGCTCCTCCACAATGAGAGAGGAAGTAACAGCTGACACCTCTGTCTCTTTGTCCTCAGAGGAAGAGAGGCTGGATAACTACAGCTCAATAGAGGGGAGACAGTTGGCCAACAGCACAAGGGACATTAACGATAACCATGTAGTTGATGGTCCAAATGCCCCTGAGGAGGCCACTGGGGGCTCTCTTCTGATTGTGGGCAAATCTCCCCATGAAGAGCTTTGCACCCCTGTACAAGAGTCCCAGTCTCCATCTGTCTGCACTCCCCCACAGTCCCTTACTGATGGTACATCTTGGATGTCCAAAAATCCTCATCTCTGCTGCCCTGATTTCTCTGTCCCCATCGCTTCTCCCAGCCAACTGCAACCCTCCATTAAACCTGTGTCAGGACCAGGGCAGCCCTCATCAGTGCCTGTTCGGGACACACACATCCTGGCAGACCTACAGTGTCCCTGGaccacagcacacaacacacaaaacccACTCACAGGCAGTGTGGAGGTGGAGAGCCTGCCTAGTGTGGATGGGCTGGACTACTGCACAGAGTCTCCACGTGGTCCCCTGACCCAGCCCAGCCTGAAACCAGTTCAGCGGGGTGGGCGGCAGTGTGGTTCTTCCCACACGGAGTCCAGTTCATCCAGTGAGAGAGAGCTGCTGTCCCCCTGCCGGCAGAACACCCCCGCCCCTGCCCTTGGTCCCCGCGCCACCCTGTGCCCTGAGCCTCGGCAGCCTGAGAGAGCCCCAGACAGGCTGCCTCGCTGCCCTGTCTCCTACAGCCACAAAGTGGGTTCCTGCAATGACTCTGAAAGTGATGATTCGGTGCCAGACCTGGAGGAGCCAGAAAGCCACCCCCTGCGGCCTGCCGACACACAGtcccAGCTGTCTCACTCCATGCCCTCTGGAGAGGACTCCATGAACAAGGCCAAACAGAGCCGCAGTGAGAAGAAAGCACGCAAGGCCATGTCCAAGCTAGGGCTACGGCAGATCCATGGGGTGACGCGCATCACCATCCGCAAGTCCAAGAACATCCTGTTTGTCATCACAAGGCCCGACGTCTTCAAGAGCCCCGCATCTGACATCTACATCGTGTTTGGGGAGGCCAAGATAGAGGACCTATCCCAGCAGGTGCACAAGGCAGCGGCAGAGAAGTTCAAGGTGCCCCTGGACCCATCGCCGCTCATCACTGAGAGCGCGCCCAGCCTGAGCATCAAGGAGGAGAgcgaggatgaggaggagGTGGACGAGGCAGGACTGGAGGTGAGGGATATTGAGCTGGTGATGGCCCAGGCGAACGTGTCCCGCTCCAAGGCCGTCCGTGCACTGCggcacaacaacaatgacatcGTCAACGCCATcatgGAGCTGACGAtgtagaagagagagagagagagggagatgaggCTCTGTCTATACCCGCACAGTGAACCACAGCTCATACACAATATAGACTCCACTGTATTGCTGCTACATTGCATCCCTATACCTGCTCAATAAACCAGTCTGTTATAACCAG

Function

symbol description
nacad Predicted to enable unfolded protein binding activity. Predicted to be involved in protein targeting to membrane. Predicted to be part of nascent polypeptide-associated complex. Predicted to be active in cytoplasm. Orthologous to human NACAD (NAC alpha domain containing).

NR:

description
PREDICTED: nascent polypeptide-associated complex subunit alpha-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002403 True 6869 mRNA 0.56 9 13196825 13213803

Neighbor

gene id symbol gene type direction distance location
AMCG00002397 NA coding downstream 10788 13182721 ~ 13186037 (-)
AMCG00002396 NA coding downstream 17050 13152368 ~ 13179775 (-)
AMCG00002399 NA coding downstream 44499 13151589 ~ 13152326 (-)
AMCG00002395 NA coding downstream 75542 13118480 ~ 13121283 (-)
AMCG00002398 NA coding downstream 94297 13094064 ~ 13102528 (-)
AMCG00002404 NA coding upstream 5805 13219608 ~ 13227144 (-)
AMCG00002405 ccdc12,LOC102782761 coding upstream 24940 13238743 ~ 13249851 (-)
AMCG00002410 setd2,LOC106606040,LOC107596709 coding upstream 119192 13332995 ~ 13369397 (-)
AMCG00002411 NA coding upstream 163364 13377167 ~ 13384055 (-)
AMCG00002415 NA coding upstream 192549 13406352 ~ 13411130 (-)
G122897 NA non-coding downstream 49153 13141868 ~ 13147672 (-)
G122879 NA non-coding downstream 127587 13068834 ~ 13069238 (-)
G122877 NA non-coding downstream 129198 13067221 ~ 13067627 (-)
G122869 NA non-coding downstream 144435 13052026 ~ 13052390 (-)
G122858 NA non-coding downstream 191490 13000841 ~ 13005335 (-)
G122942 NA non-coding upstream 71534 13285337 ~ 13286312 (-)
G122945 NA non-coding upstream 75238 13289041 ~ 13289249 (-)
G122946 NA non-coding upstream 75505 13289308 ~ 13289916 (-)
G122947 NA non-coding upstream 77323 13291126 ~ 13291819 (-)
G122948 NA non-coding upstream 78518 13292321 ~ 13292568 (-)
G122862 NA other downstream 167419 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 1190473 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 1323963 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 1341934 11848470 ~ 11854891 (-)
G122597 NA other downstream 1462501 11731617 ~ 11734324 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 435424 13649227 ~ 13654247 (-)
G123263 NA other upstream 1727457 14941260 ~ 14946311 (-)
G123585 NA other upstream 3622353 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 3744359 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 4476205 17690008 ~ 17706289 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_06958001_06967286 NACAD coding CI01000027 null 6958001 ~ 6967286 (-)
striped catfish (Pangasianodon hypophthalmus) G328342 LOC108256401 unknown NC_047616.1 CM018562.1 7056794 ~ 7062428 (-)