G328342 (LOC108256401)


Basic Information

Item Value
gene id G328342
gene name LOC108256401
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7056794 ~ 7062428 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU388974
CTTCGGGTTTCTCTTGTCTGCAGGTTTCTGATTTTAAGCCTGACTGCTCATTCACATTTTGATGTGTATCCTGTATTGGAAGTGAGACTGATAATTCTTCCTCAGACTCAACATCTGGCTGTTCCATATTTATCACTTCAAGAGGGCTCTCTGATACATGTTGATGCAGTCCATCATTTACTGTTGTTTCGGTGAGGAGACTGTGTATTTGAGAACTGTTAAATGAAGACTGGGACTCTTGTATAGGTGCAGAAAGGTCTTCCTCCAACACATCTGTAGATGAGGAAGAAGTAGAATGTCTGCTGAGTTCTGAAGTTTCTTCTTCAAACGTTAAGGAGGCCCTGACATCATTATCACTGGCATcttgtgtgcttttgtgtgatTCCAGCCCTTCTAAGGTGCCATGATTAAGTGCTTCCTTCTGATCTGAACTGCCAAGACCATGTAAGTCAGTAGAACCCGTTGATTCTGTCAAGTTGGGGTTTCTCTCAAGAGTATTGGAGCTGGAGACTGCAGGGTGGAATACAGTTTGAACTGGTGTTTGATGATTGCTTTTCTCTCCTCTACcatcatttttgtgtatttgctgttGAACATCTGGAGTATATTTGTTACtctgaaaaaaattatcatttGCCGAGGTTTTAATAATTTCAGTCTCAGGTTTACTGTCTTTATTTGTGATGCCTTCCTTTTTCTCCAGGGCAGCAGCTGTTTTACTTTTGTCAAAGGTGACAGGTTCCTTTGGTATCATGCTATCTGAATCATTTTTCCTCCCTGCATTAACTATGGTGGTATTCAGTtctattttttctgtttcagagtAATCTGATTTCTGTGAGACTTCAGTCTCCTCTTTGCTCAGTTCCAAAACATTAGTATTCTCTCTGATATTTTCATTTGCCTCCTCTTCTGGACATGTTTCCATGACCTTCTCATCCTCCTTTTCCTTGAGTGAAATACATACACTTCTTTCAGTCTTTGGTTCAATTTTTTCGTCAGCCACTTGACTACCAGAATTCAGCTGATTTTCATCTTTTGTAATGTTAGACTGTAATTGTCTGGTATCTAGATTTGTTGCCCCAGTTGTAACCCCCTTATTAGAGCAGGTAACTGTGTCTTTGTGTATCAGAGACTTGTCAGAACAGGAAATATCAAGCTTTGATTCCTTGAGTGAAATACATACACTTCTTTCAGTCGTTGGTTCAATTTTTTCGTCAGCCACTTGACTACCAGAATTCAGCTGATTTTCATCTTTTGTAATGTTAGACTGTAATTGTCTGGTATCTAGATTTGTTGCCCCAGTTGTAACCCCCTTATTAGAGCAGGTAACTGTGTCTTTGTGTATCAGAGTCTTGTCAGAATAGGAAATATCAAGCTTTGATTCCTTGAGTGAAATACATACACTTCTTTCAGTCGTTGGTTCAATTTTTTCGTCAGCCACTTGACTACCAGAATTCAGCTGATTTTCATCTTTTGTAATGTTAGACTGTAATTGTCTGGTATCTAGATTTGTTGCCCCAGTTGTAACCCCCTTATTAGAGCAGGTAGCTGTGTCTTTGTGTATTAGAGTCTTGTCAGAATAGGAAATATCAAGTTTTGATTCACTTGATTTCTTTTTGTGGTCAAAGTTGCCAAATGACCCCCCTTCTAGTTTAAAAACAGACTTGTTTTCTAAGACTACTGAATCAGTATTTACCAGGCACATTTGTTTAGAAGTTTCAAGAATTTTTATGTCACTTGGTTTGTCTGATATTTTATCTGTTGTGTTGGGCCCACAGAGATCATTTTGTTTGTATGAATTGGTAGAACCTAAAGTTAGTGCTTCATCATGTTCTTGAGCTGATTCAAGGACTTCTGGTCCCTGTTTAGGCAAAATGTCAGGGCTTTCATCTATGAATACTTTTGATGTGGGTTCTCCAGGAATGTTAAATTCTGTGTCAGTGGTCTGGTCTTTCTCATCTTTCTCATCTTGTGAAAGGATATTTAATGGCATACAAGTTGATTGTGCACCTGGGATACTGGGTGAACAGCTCTTTTCTGGGTTGTTCCATGTAGTTTCCTGAATATTTTCTGGATGGCATTGTATAAGTGCATTATTGTCTGGATTCTGGAGGTTGTTTGCATCATCCTCACCCCCTCCTGCTTCTGAAAGGTCCTCAATGGATTTCCAAGTGGACAGATTTGACTCCAGCATACCAGCCTCATTATTTGCCATCTTGTCTGGCAAGTCACAGTAGCTGTTGTTGTCCTCAAGGTCACCCATGATGTTATCTCGAGCTGAAATGTTGGGAGTTACAGACAGCCCCTTATTGTGCAGTGATCCAGCTATCTCACACATAAGCAAATTCTCTGGCCTAAAGTCACAGCATGTGTCTAAAGACAAGGGCTCTTCTGGAACCCAATCTTCAGAAGAAACACTCTTTTCTGTTATGCTACTTTGGGAATTCTCCTTCTTTGGTGAGATGGCAAGCATGCTGTAAGTAGAAGAGGACATATTTAAAGAGCCAACACTTGTATCATCTGTGCTGGGTTGATTTTCGGTCAGGTTGTCTTGGTCAAGAGACTGTTCAGTTGGGGAAATATCAGCAGGAGTTAAGTTATCTGGTACTTCAGACAGTTCGGGATAGGCACAAACTGGTATGTTTGTGGGGCTACAATCATCTTTAGGATAGGACAACAAAGGGACTCCCTTGTTGAGATCATTGGTTGCTGTCTCATCAAGCTGGAGTGAGGTATTCAAGAATTCAGAgttatttccatttttctgaTCTAAATCTTTTTCATCTGGAATATTTATCTTATTATCTATGCCTGCTGCTGTGGCACCAAGCACACAAAGGACTGGTTTAATGTATATTTCTGATACTTCACCTAGTTCTGCTGAGCTTGCCTGATTTCCTGAGCCTTGAATGTTTGTATGGACACTTTGTTGAGACACCACACAGCATACATTGTCTGTTTCTTCCGCATTTTTGAGATCTGTGCTCTGCTTATTCTCTTCACTTTGTTCCCTAATATCGCTTGAGGAATCTAGTCTCTTTGCACACTCTTCCTTTGAATTAGGTGTGCTTATGTCTTCAGCATGTGCTGTGCAGACTGACATATGTTGCTGAACTAATGCATTTGATGGCCCAGAGGATCCAGAGGAAATCTCCATTTCACTCTCACTTCCAGAGGATTCTGGTCGCGCATGGCTTACTGAATGCACATGGTCATCTTGTGCAGGAAATTGCTGTGCAAGCTCAGCATGTCTCTCTGTGCTGTACAGGTGGTCATCCTCATCTCCATTACAAGAGGTGGAATCAATTGACTCCTCTGTGTCATCTTGATAAGCAAATGACTCATCTACTCCATCGTTAATTGAGTTCTCAGAAAGTGAATTTAGGAAAGAGGCAGAGGTATCCTCTTCATTTGTATCATCAACACCCCTTGCTCCAATCTTTATGGCTTCAACTTGCTGTTCCAAATCACTGTCATCATTTATGTCcacatcttcatcttcatcatcatattCATCCACATCCCCCTCTTCCTCTCCAGCAGCATATGCATCAACATCATTTTCTGGCTCATCATCTGTAGGGAATAATGTTATTTCCATTGAATCTGCTTGGAATATCAAGCTGGCATGGACCGGTAGCATCGACGCAGGAATCATCCCCTCTCCACCAGGTCCATCATCCCTGGAGCACCCATGGAAGAAGAGAGCAGAAGATCCCATCTCACCATACAAGCTGTTATTATCCGTGTCTGAAATCTCTGATGAACAAGTGGCAGGGGTCAGACTGCCTGTCTCTAAAGTGGTTGAAGCTCCTGCCTGCTGGTGACTGAAGGGAGAAGAACATGCCAGATCTGAAGGAAAGTCCTCTTCAAGGCTTAGAGGAGCATCATGTCTGGCAAAGTGCTCTGAGATACAGGCATTAAAGTCCATCTCTTGCTCCTGATCTGGATCATCCAAAGGCTGTGATATGTCAGGGGCTCTTGGAATTTCTTCCTGGACTAAGGTGGCCTCAGATCCCCCTTCCTCATGTTTTGAGTCTGTGGTTCTACCACTGCTGCTTCTGTCTGGGGAAACATTCTCTGTCACCCAGTGAGGCCTACAAGTCTCTATCTTTATCCTTTCCTCCTCATGTTCCTCACTCTCAGACAACTCTGGCATGACAGATTTACACAGACAATGCTCCCTTTCAGCCACGAGTCTGTCATCTCCCAGCTCATCCCCAATCTCAGAAAGAGAGCCCACATAGCAGGCAGGGACCTCCTGCAATTCAGCTTCAGCAGTTAGATTAGGTGAACAGGAGTGAGAAGTGCCAGAATTATAGGAGGAGGTCCAACTGCCACCTTCAGCAGTAATGTAGGATCCGGATGGAGATGTGGGAGGGGAACACAGATCAGACTCATCTGTTGGTGAACCAGGACCTGTGCTTGGACTGCTTGGTTGCCATTGTTGCTTAAGATGTGAGCAATAGGCCATCTTAATTGGGGTGGAAGGGGCTGTGTAATAACGATCTGGGTCCAGTCCAGGAAGGACACCAATGCGTTGAGGATCAACTGGATAGGAGGGCTCAGAGAAGGACAAGGAAGGCACTTCACCCTGAGATAGAGACAGTGTGTCTCCTTCATCATCTGGGAAAAAGGTGCTGCTTTCAGTCAGCCCAGTATCTGTTGATTTGGGTTCTAGAATCGGGCATTCAAGTAGCTGATCTAAACTTCTCTCTTGTTCAGGGGCTGGGGTCAAAGTCTTAACCTGGTCAGATTTTTCAATCTCTTGACCAGTATCAAGTTTAAGTTTCTCCTCTACCCTAATCTGTCTCTCTACCAGAAGGGTAGAAGTATCTGAGTGAGGGGGTTCTGAACTGGATGATTCTTTACTTGTCTTTTTGTCTGGAGGCACACCAATCTGTGTCTCCATGTTTTTCAGTAATGCTTCTTGTCCCATAACAACCCTTGCATCCATGGACTCAGGTTCTTGGTAGTCACTCTCCACTTCAGCTCCAGTTAGAACTTTaattctctccattttcactggCCCCCGTCTGCATCCACCTCTACCAAACCGCCCTGTTAGCCGGCCTACTGTGTTCCCATCTGATTCAAAGCTGGCACCCTCTGGTTGAGGTCGAGTAGAAGTGTTTGGTTTAGACATGACCAAGCGAGGTCCAAACGGAGATGTACATTGTGGGGACAGCTTGGGTGGAGTGCTTGGAGATGGGCTGGAGGCACTGTCAGTTGGAGTTGAGGCTGTGGAGCTTGAGGTTTGCCTGGACAAATCTGAAAAAGAGGGCAATAAGAAATTTAGGAAATACATAAGCAACAACTTTTAATGCCATCTTCGGTAAATCATAAAATATTCCTTTGTGTAAAGGGAAAAGGTTGACCTTTAGGTGAACTACTTGTGGTCTTGTACATTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU388974 True 5416 TUCP 0.43 2 7056794 7062428

Neighbor

gene id symbol gene type direction distance location
si:dkey-12j5.1 LOC108256403,LOC108426361 coding downstream 27367 6954760 ~ 7029427 (-)
LOC113532609 LOC108256720 coding downstream 107769 6944781 ~ 6949025 (-)
steap4 steap4 coding downstream 438121 6608684 ~ 6618673 (-)
mindy3 fam188a,LOC107689882,LOC107681582,LOC107717794,LOC107738860 coding downstream 495692 6508334 ~ 6561102 (-)
itga8 itga8,LOC107681583,LOC107689880 coding downstream 561988 6394584 ~ 6494806 (-)
glipr2l glipr2,glipr2l,LOC107706057,LOC107689891 coding upstream 4570 7066998 ~ 7071362 (-)
LOC113532636 NA coding upstream 12771 7075199 ~ 7086865 (-)
tmem67 tmem67 coding upstream 29113 7091541 ~ 7120969 (-)
LOC113532854 LOC108256544,LOC100304805 coding upstream 61583 7124011 ~ 7137119 (-)
LOC113532705 LOC108256546,LOC100304805 coding upstream 79062 7141490 ~ 7154574 (-)
G328215 tbrg4 non-coding downstream 24070 7031364 ~ 7032724 (-)
G328083 NA non-coding downstream 315748 6648296 ~ 6741046 (-)
G327560 NA non-coding downstream 972145 6083366 ~ 6084649 (-)
G327508 NA non-coding downstream 1218517 5837883 ~ 5838277 (-)
G327507 NA non-coding downstream 1219012 5837489 ~ 5837782 (-)
G328439 NA non-coding upstream 314459 7376887 ~ 7378436 (-)
G328565 NA non-coding upstream 385745 7448173 ~ 7448967 (-)
G328562 NA non-coding upstream 387969 7450397 ~ 7452117 (-)
G328580 NA non-coding upstream 446441 7508869 ~ 7509107 (-)
G328588 NA non-coding upstream 495967 7558395 ~ 7558649 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 673206 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 1078415 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 2079267 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 2709541 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 3090679 3957497 ~ 3966115 (-)
sec61b sec61b,LOC102796100 other upstream 316303 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 3089069 10151497 ~ 10156800 (-)
G330185 NA other upstream 3460304 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 3860698 10923126 ~ 10930775 (-)
G330379 NA other upstream 4019840 11082268 ~ 11083151 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_06958001_06967286 NACAD coding CI01000027 null 6958001 ~ 6967286 (-)
bowfin (Amia calva) AMCG00002403 nacad,LOC107579097 coding CM030136.1 CM030136.1 13196825 ~ 13213803 (-)