LOC113532636


Basic Information

Item Value
gene id LOC113532636
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7075199 ~ 7086865 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924093.2
AGGAAGCAATAAGTCAGCAGAAGAGGTGGAGCTGTGTCTTTTGAACTGGTTTGAGTTTCATTATTTCCACCGATTGTTTCGTCAGTAAAGCTGGTCTGAAAGCCGGATCTGATTCATTTGGGGCTGAGAGGAAGCTGGAACATTTGCTGTTTGTACACtgaggagagaaaacagaggTGATAATGGCTTACAGCAGatACTGGATTCAAGACACAAATTTCAGAGGCTGTGACTACACGTATTATGAAGGGGAACATGTGAATTTAACTGAGCTAGAAGAGGACCACCCTGACCATGGCTACCTGGGGAGGAACAGCACTCCCTTTTATCCTGAATGTGTCTTCGATGTAGCCAACGTTTGCCATGTAACCGAGAAGAGTGGCCTTCATGGAATCTTCAGAGATCACGGATTCCGAGGGAATGATAGCTTCCTGTGGTGGAGCCTTTCAGTGACTGATGAAGATATCGTCAATGCTGAGAACAAGTTCCTCACCTCTCAAAATTTTTCATGGCAAAACCCGAATCAGaagcctttcctgaaaaaattCACCACTTCACCCGCATTCCAGAGCGAATCCCGTTATGGCAACTTCCGCTTCACTTTTAAGCTAAAAGAGCTCCTGAAGATATACAGCAAGGAGTATTGCGAAAGAACTGCTCCGATTCTGCGCGTGTTAGACACCAAGCTCTACAAGCAAGAGATTCTCTATTCAATTTTGGTGCATCCACGATACATGACACACTATAGGAAATACCCCCGCCTACCCATTGATGATAATTCTTTGTGTGGGTATAGTCAAGGGTCAGTGTCCTGGCGCTGCCAGTCTCCTTCAAATAACTATAAATACCGCCTGAAGGTGGATGATGAGGAAGGTGAAGTGTCTGCCAGACCGCTGAGAAGGACAGAATATTTTGTATGGGATAAAGTAGCCGTGGCCTTCCACATGAAGCGAGATTGGATACTGCCTGTAGGTCATGCACAGCTATTTGACAACTTGAGTGTATGTAAGACAGCTTCAAAAAATCTGTTAAAGGAACCAAAAATGTCTGTCCATGAGGCTAAGAAAGAAGTAGAGAATTTGAGAAAGATGTATCTTTGATCAGAGGTGGTTGGTCTTGCTTCTGTAGTTTCACAAAAGTTTTGTAATTCTAACAAATTCACCCAGACCACATATTTAAAATTAGAAAGTATGTCTGAATGAAACTAATATGCCACTAAtatggtcagaaggtgctgagtaattttctataaccgcaACTCTAACAGTAGTGCAGGCTGCAATTCAAttgacatgtttatattaatatgttttttttaaaacatagaattgttgatatggtgaagctttctgcaaGAAGTTCATtgaacattcatggaaggagtcttcagtgtcagcactgttataatgttataatgtttgCTAAGTTGTCTTACCACAGACAACTCCTAATAACAATCTGATCTCCTAATAATGTCCACTAGATGGTTGTGAAATGCCATGAAGCCTGTTGTTGAAGCTTTGCCTTTCATTATATTGAATATGTAAAACCTTCATAAATGCTTTCATATATATTCCTATAcagttcagtgtttttaatAACATGGAAGTTTCTGCATCTCTAAAAGTACATTTGTTCTGGTCTGttgctctgtttgttttttacccATTGACccaaaaatgcaataaaagtaATGAAGGGAATCTCTTATTTTCATCTCCAAATTCTGAAAATTTAGATTACAGTGTGATCTATACACTTAAATTGATAATGTGGTGCACACATGCATATTGGGTGGACAGTAGTATACATGGTGgtcaggggtggaaaatactttattactattcttaagtattattttggcataCTTATAGTACTTAATACACttcatcagtgtagaaaaaTTGATCAAGAATCATGCCAATTTGTCATCTGCAGTGATATACATTGTAGTTAGCTATCCATGTGAACACCATGTACACAGATCCCaatattctaaaataaacattttagattctaACTTGTCCATTAAAATTGTAAAGTACTGTTATTACTTTGTAAATTCGTAGCCAAGGCAAGTTCATAGCAAATTTAGAAAagagtctttttcttttcttgttttttgatTTCAATATGTATATGGATTGAATGGAAGACAGATGGGTTTTCCCTTTTAAAAAACTCCtctgtaaaatgaaacattttgagCTATTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924093.2 True 2217 mRNA 0.38 3 7075199 7086865

Neighbor

gene id symbol gene type direction distance location
glipr2l glipr2,glipr2l,LOC107706057,LOC107689891 coding downstream 3837 7066998 ~ 7071362 (-)
si:dkey-12j5.1 LOC108256403,LOC108426361 coding downstream 45772 6954760 ~ 7029427 (-)
LOC113532609 LOC108256720 coding downstream 126174 6944781 ~ 6949025 (-)
steap4 steap4 coding downstream 456526 6608684 ~ 6618673 (-)
mindy3 fam188a,LOC107689882,LOC107681582,LOC107717794,LOC107738860 coding downstream 514097 6508334 ~ 6561102 (-)
tmem67 tmem67 coding upstream 4676 7091541 ~ 7120969 (-)
LOC113532854 LOC108256544,LOC100304805 coding upstream 37146 7124011 ~ 7137119 (-)
LOC113532705 LOC108256546,LOC100304805 coding upstream 54625 7141490 ~ 7154574 (-)
invs invs,LOC107596027,LOC107706121 coding upstream 98212 7185077 ~ 7223848 (-)
stx17 stx17 coding upstream 161523 7248388 ~ 7268807 (-)
G328215 tbrg4 non-coding downstream 42475 7031364 ~ 7032724 (-)
G328083 NA non-coding downstream 334153 6648296 ~ 6741046 (-)
G327560 NA non-coding downstream 990550 6083366 ~ 6084649 (-)
G327508 NA non-coding downstream 1236922 5837883 ~ 5838277 (-)
G327507 NA non-coding downstream 1237417 5837489 ~ 5837782 (-)
G328439 NA non-coding upstream 290022 7376887 ~ 7378436 (-)
G328565 NA non-coding upstream 361308 7448173 ~ 7448967 (-)
G328562 NA non-coding upstream 363532 7450397 ~ 7452117 (-)
G328580 NA non-coding upstream 422004 7508869 ~ 7509107 (-)
G328588 NA non-coding upstream 471530 7558395 ~ 7558649 (-)
G328342 LOC108256401 other downstream 12771 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 691611 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 1096820 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 2097672 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 2727946 4308606 ~ 4347253 (-)
sec61b sec61b,LOC102796100 other upstream 291866 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 3064632 10151497 ~ 10156800 (-)
G330185 NA other upstream 3435867 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 3836261 10923126 ~ 10930775 (-)
G330379 NA other upstream 3995403 11082268 ~ 11083151 (-)

Expression


Co-expression Network