G328083


Basic Information

Item Value
gene id G328083
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 6648296 ~ 6741046 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU388686
gtctcggacttgtaacccaaaggtgaacctgaaggtcgtgggttcgagtctcaggtccggcagggattgtaggtggggggagtgaatgaccagcgctctctcccaccctcaataccacgactgaggtgagacccttgagcaaggcaccgaacccccaactgctccctgggcgccgcagcaaaaaaggctgcccactgctccgggtgtgtgttcatggtgtgtgtgtgttcactactgtgtgtgtgtgtgtgcacttggatgggttaaat
>TU388687
gacttgtaacctgaaggtgaacctgaaggtcgtgggttcgagtctcaggtccggcagggattgtaggtggggggagtgaatgaccagcgctctctcccaccctcaataccacgactgaggtgagacccttgagcaaggcaccgaacccccaactgctccctgggcgccgcagcaaaaaaggctgcccactgctccgggtgtgtgttcatggtgtgtgtgtgttcactactgtgtgtgtgtgtgtgcacttggatgggttaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU388686 True 269 lncRNA 0.57 2 6648296 6708767
TU388687 False 263 lncRNA 0.57 3 6648296 6741046

Neighbor

gene id symbol gene type direction distance location
steap4 steap4 coding downstream 29623 6608684 ~ 6618673 (-)
mindy3 fam188a,LOC107689882,LOC107681582,LOC107717794,LOC107738860 coding downstream 87194 6508334 ~ 6561102 (-)
itga8 itga8,LOC107681583,LOC107689880 coding downstream 153490 6394584 ~ 6494806 (-)
trnam-cau_47 NA coding downstream 218364 6429860 ~ 6429932 (-)
rbm42 rbm42,LOC108438105,LOC107709618,LOC107686691 coding downstream 255982 6385083 ~ 6392314 (-)
LOC113532609 LOC108256720 coding upstream 203735 6944781 ~ 6949025 (-)
si:dkey-12j5.1 LOC108256403,LOC108426361 coding upstream 213714 6954760 ~ 7029427 (-)
glipr2l glipr2,glipr2l,LOC107706057,LOC107689891 coding upstream 325952 7066998 ~ 7071362 (-)
LOC113532636 NA coding upstream 334153 7075199 ~ 7086865 (-)
tmem67 tmem67 coding upstream 350495 7091541 ~ 7120969 (-)
G327560 NA non-coding downstream 563647 6083366 ~ 6084649 (-)
G327508 NA non-coding downstream 810019 5837883 ~ 5838277 (-)
G327507 NA non-coding downstream 810514 5837489 ~ 5837782 (-)
G327505 NA non-coding downstream 811990 5836070 ~ 5836306 (-)
G327362 NA non-coding downstream 908708 5738537 ~ 5739588 (-)
G328215 tbrg4 non-coding upstream 290318 7031364 ~ 7032724 (-)
G328439 NA non-coding upstream 635841 7376887 ~ 7378436 (-)
G328565 NA non-coding upstream 707127 7448173 ~ 7448967 (-)
G328562 NA non-coding upstream 709351 7450397 ~ 7452117 (-)
G328580 NA non-coding upstream 767823 7508869 ~ 7509107 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 264708 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 669917 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 1670769 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 2301043 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 2682181 3957497 ~ 3966115 (-)
G328342 LOC108256401 other upstream 315748 7056794 ~ 7062428 (-)
sec61b sec61b,LOC102796100 other upstream 637685 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 3410451 10151497 ~ 10156800 (-)
G330185 NA other upstream 3781686 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 4182080 10923126 ~ 10930775 (-)

Expression


Co-expression Network