rbm42 (rbm42,LOC108438105,LOC107709618,LOC107686691)


Basic Information

Item Value
gene id rbm42
gene name rbm42,LOC108438105,LOC107709618,LOC107686691
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 6385083 ~ 6392314 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923938.2
GCTACACGCCATCTTGTCACCATGTTAGACGCCATTAATTCCACAGAAGAAGAGGAATGACGACTTTCTAACCAAATATTTCTCTTCGGTTTTTGCTTTATTGCTTGAGGTGTTTGATACTTAAGGAGTCCCTCATGATGGCACTAAAATCAGGCGAGGAGCGCCTCAAGGAGATGGAGGCAGAGATGGCGCTGTTCGAGCAGGAGGTTTTGGGAGGACCGGTGGCTGTGACTGCAGGAGGCCCTCCTGTAGTGGAGGCTGTTCCAGTGGCTCTGGCTGTGCCGGCTATGCCGGTGGTCCGGCCCATCATAGGCACAAACACCTACCAACAGGTCCAACAGAGCTTGGAGGCAAGAGCTGCTACGTTAGTCGGACCTCCACCTCCTGCATTCGTTGGTCCAGCCGTACCTGCAGTGCGGCCTCCGCCAATGATGCGACCTGCGTTTGTTCCACACATCCTACAAAGACCAGGGGGACAGAGAGAGCCAATGATGCGCGGCCCTCCACCGCACGGTATGATGGCACCTCCACTGCCCCGCCCTCCTCCCCCACCACCAATGATGATGGCGCCCCCAATGGCCGGACCGCCTCAGCATCCTATGGCTTCCATCGGACCGCCTATGGGGCCAATGAACCCAGTTACGCCTGTTGAGACAATGAACCCAGTGGTGGCAGCACCACCTCGGCCAGTGACGCAGGCTCCGCCCAAAGTTACCCCCAGCATTATACAGGCAGCCCCCACCGTTTATACAGCACCGCCCGCCCGCCAGAGACCAGACATGAGAGCACAGAGACAAGCACGCATGGAGGAGCTGGCAGCATCCGTAGCTGAACAGCAGGCAGCTGTGATGGCAGCCGGGCTCCTGGAGGCCAAGAAGGACAGCGTCACGGATGACAGCGTCATCGGGCCGACGATGCCTGAGCCGGAGCCTGTACACATAGAGCCACCAGAGAGCATCACGGAGGATAAGAAGAAAGGGAAACAGGAGAAAGTGAGGAAATGCATCCGTACAGCCGCGGGCACAACTTGGGAAGACTCCAGCCTAGCAGAGTGGGACACAGATGACTTTAGGATATTCTGTGGAGATCTGGGTAATGAGGTGAACGACGACATCCTGACAAGAGCATTCAGTCGCTATCCATCCTTTCTGAAGGCTAAAGTGGTACGAGACAAACGCACTGGGAAGACCAAGGGCTATGGCTTTGTCAGCTTCAAGGACCCCAATGACTATGTGCGTGCCATGAGGGAGATGAACGGAAAATATGTAGGCAGCAGACCCATCAAATTGCGAAAGAGCACATGGAAAGACAGGAACCTGGAGATTGTACGCAAAaagcagaaggagaaaaagaagctCGGGCTTAGATAAGCTCTGAGAGAACTGTAGTGCAAGTGTGAGAGAGTGCTACACACCTCCATCTCCTGCTACACACCAACAGCCTCAAGATGGGAAAGACTGGAATTTATTGATGTTCTAATACACATCTGTGGTAGTAGGGGATAGGAGTGGATCAGTATAAAGTGTGCATAAAGTGTGAAGCTTTGATTAATGACATTGGCTGCAGTGCAGTGTTGGTTCTCATTTTAGTCACATTTCACTACCCAGGTCATTAGAATGCACTGCACTGACACTTCCTCTTTTTGTATTGATCCAAGtcttttaaaattgcattcaACATAAACTTTCAAACCTATGTAGTACAATGTTGTGTTTTATCTTGATTTTTGCTCACCCAGTTACCAGAAATAACCATCTTGTTCTTTTAATTTGATGTTAGAAGGAGCTGGTATACAAAATGCAAGACTTGTCAATAAAcctcatgttttattttgcatgCCA
>XM_026923939.2
tgttttgttttttttttagcaactcTTACACCCCAGACAACGCTTTTGCAGTAGCTCACCGGCAAGTAGTTTTCAGTTTGaacaatttagctagctagcaagagTGCTAACTGCAAGCTGCTGAATTTAAACCAAGAGTCCCTCATGATGGCACTAAAATCAGGCGAGGAGCGCCTCAAGGAGATGGAGGCAGAGATGGCGCTGTTCGAGCAGGAGGTTTTGGGAGGACCGGTGGCTGTGACTGCAGGAGGCCCTCCTGTAGTGGAGGCTGTTCCAGTGGCTCTGGCTGTGCCGGCTATGCCGGTGGTCCGGCCCATCATAGGCACAAACACCTACCAACAGGTCCAACAGAGCTTGGAGGCAAGAGCTGCTACGTTAGTCGGACCTCCACCTCCTGCATTCGTTGGTCCAGCCGTACCTGCAGTGCGGCCTCCGCCAATGATGCGACCTGCGTTTGTTCCACACATCCTACAAAGACCAGGGGGACAGAGAGAGCCAATGATGCGCGGCCCTCCACCGCACGGTATGATGGCACCTCCACTGCCCCGCCCTCCTCCCCCACCACCAATGATGATGGCGCCCCCAATGGCCGGACCGCCTCAGCATCCTATGGCTTCCATCGGACCGCCTATGGGGCCAATGAACCCAGTTACGCCTGTTGAGACAATGAACCCAGTGGTGGCAGCACCACCTCGGCCAGTGACGCAGGCTCCGCCCAAAGTTACCCCCAGCATTATACAGGCAGCCCCCACCGTTTATACAGCACCGCCCGCCCGCCAGAGACCAGACATGAGAGCACAGAGACAAGCACGCATGGAGGAGCTGGCAGCATCCGTAGCTGAACAGCAGGCAGCTGTGATGGCAGCCGGGCTCCTGGAGGCCAAGAAGGACAGCGTCACGGATGACAGCGTCATCGGGCCGACGATGCCTGAGCCGGAGCCTGTACACATAGAGCCACCAGAGAGCATCACGGAGGATAAGAAGAAAGGGAAACAGGAGAAAGTGAGGAAATGCATCCGTACAGCCGCGGGCACAACTTGGGAAGACTCCAGCCTAGCAGAGTGGGACACAGATGACTTTAGGATATTCTGTGGAGATCTGGGTAATGAGGTGAACGACGACATCCTGACAAGAGCATTCAGTCGCTATCCATCCTTTCTGAAGGCTAAAGTGGTACGAGACAAACGCACTGGGAAGACCAAGGGCTATGGCTTTGTCAGCTTCAAGGACCCCAATGACTATGTGCGTGCCATGAGGGAGATGAACGGAAAATATGTAGGCAGCAGACCCATCAAATTGCGAAAGAGCACATGGAAAGACAGGAACCTGGAGATTGTACGCAAAaagcagaaggagaaaaagaagctCGGGCTTAGATAAGCTCTGAGAGAACTGTAGTGCAAGTGTGAGAGAGTGCTACACACCTCCATCTCCTGCTACACACCAACAGCCTCAAGATGGGAAAGACTGGAATTTATTGATGTTCTAATACACATCTGTGGTAGTAGGGGATAGGAGTGGATCAGTATAAAGTGTGCATAAAGTGTGAAGCTTTGATTAATGACATTGGCTGCAGTGCAGTGTTGGTTCTCATTTTAGTCACATTTCACTACCCAGGTCATTAGAATGCACTGCACTGACACTTCCTCTTTTTGTATTGATCCAAGtcttttaaaattgcattcaACATAAACTTTCAAACCTATGTAGTACAATGTTGTGTTTTATCTTGATTTTTGCTCACCCAGTTACCAGAAATAACCATCTTGTTCTTTTAATTTGATGTTAGAAGGAGCTGGTATACAAAATGCAAGACTTGTCAATAAAcctcatgttttattttgcatgCCA

Function

symbol description
rbm42 Predicted to enable RNA binding activity. Acts upstream of or within lens development in camera-type eye. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ribonucleoprotein complex. Orthologous to human RBM42 (RNA binding motif protein 42).

NR:

description
PREDICTED: RNA-binding protein 42-like

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K25079 RBM42; RNA-binding protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923938.2 False 1841 mRNA 0.51 11 6385083 6392314
XM_026923939.2 True 1851 mRNA 0.51 11 6385083 6392175

Neighbor

gene id symbol gene type direction distance location
zmp:0000000951 LOC108256735 coding downstream 68825 6313524 ~ 6316258 (-)
dcaf13 dcaf13 coding downstream 82907 6291529 ~ 6302176 (-)
rims2a rims2a,rims2,LOC108256727,LOC107095553,LOC107556969,LOC108438094 coding downstream 96719 6094031 ~ 6288364 (-)
LOC113532744 dcstamp coding downstream 297275 6085341 ~ 6087808 (-)
oxr1a oxr1 coding downstream 605690 5603689 ~ 5779393 (-)
itga8 itga8,LOC107681583,LOC107689880 coding upstream 2270 6394584 ~ 6494806 (-)
trnam-cau_47 NA coding upstream 37546 6429860 ~ 6429932 (-)
mindy3 fam188a,LOC107689882,LOC107681582,LOC107717794,LOC107738860 coding upstream 116020 6508334 ~ 6561102 (-)
steap4 steap4 coding upstream 216370 6608684 ~ 6618673 (-)
LOC113532609 LOC108256720 coding upstream 552467 6944781 ~ 6949025 (-)
G327560 NA non-coding downstream 300434 6083366 ~ 6084649 (-)
G327508 NA non-coding downstream 546806 5837883 ~ 5838277 (-)
G327507 NA non-coding downstream 547301 5837489 ~ 5837782 (-)
G327505 NA non-coding downstream 548777 5836070 ~ 5836306 (-)
G327362 NA non-coding downstream 645495 5738537 ~ 5739588 (-)
G328083 NA non-coding upstream 255982 6648296 ~ 6741046 (-)
G328215 tbrg4 non-coding upstream 639050 7031364 ~ 7032724 (-)
G328439 NA non-coding upstream 984573 7376887 ~ 7378436 (-)
G328565 NA non-coding upstream 1055859 7448173 ~ 7448967 (-)
G328562 NA non-coding upstream 1058083 7450397 ~ 7452117 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 1495 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 406704 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 1407556 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 2037830 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 2418968 3957497 ~ 3966115 (-)
G328342 LOC108256401 other upstream 664480 7056794 ~ 7062428 (-)
sec61b sec61b,LOC102796100 other upstream 986417 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 3759183 10151497 ~ 10156800 (-)
G330185 NA other upstream 4130418 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 4530812 10923126 ~ 10930775 (-)

Expression


Co-expression Network