trnam-cau_47


Basic Information

Item Value
gene id trnam-cau_47
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 6429860 ~ 6429932 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnam-cau_47
GCCTTGTTAGTGCAGTAGGTAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGATCCTCACACGGGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnam-cau_47 True 73 tRNA 0.53 1 6429860 6429932

Neighbor

gene id symbol gene type direction distance location
rbm42 rbm42,LOC108438105,LOC107709618,LOC107686691 coding downstream 37546 6385083 ~ 6392314 (-)
zmp:0000000951 LOC108256735 coding downstream 113602 6313524 ~ 6316258 (-)
dcaf13 dcaf13 coding downstream 127684 6291529 ~ 6302176 (-)
rims2a rims2a,rims2,LOC108256727,LOC107095553,LOC107556969,LOC108438094 coding downstream 141496 6094031 ~ 6288364 (-)
LOC113532744 dcstamp coding downstream 342052 6085341 ~ 6087808 (-)
mindy3 fam188a,LOC107689882,LOC107681582,LOC107717794,LOC107738860 coding upstream 78402 6508334 ~ 6561102 (-)
steap4 steap4 coding upstream 178752 6608684 ~ 6618673 (-)
LOC113532609 LOC108256720 coding upstream 514849 6944781 ~ 6949025 (-)
si:dkey-12j5.1 LOC108256403,LOC108426361 coding upstream 524828 6954760 ~ 7029427 (-)
glipr2l glipr2,glipr2l,LOC107706057,LOC107689891 coding upstream 637066 7066998 ~ 7071362 (-)
G327560 NA non-coding downstream 345211 6083366 ~ 6084649 (-)
G327508 NA non-coding downstream 591583 5837883 ~ 5838277 (-)
G327507 NA non-coding downstream 592078 5837489 ~ 5837782 (-)
G327505 NA non-coding downstream 593554 5836070 ~ 5836306 (-)
G327362 NA non-coding downstream 690272 5738537 ~ 5739588 (-)
G328083 NA non-coding upstream 218364 6648296 ~ 6741046 (-)
G328215 tbrg4 non-coding upstream 601432 7031364 ~ 7032724 (-)
G328439 NA non-coding upstream 946955 7376887 ~ 7378436 (-)
G328565 NA non-coding upstream 1018241 7448173 ~ 7448967 (-)
G328562 NA non-coding upstream 1020465 7450397 ~ 7452117 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 46272 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 451481 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 1452333 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 2082607 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 2463745 3957497 ~ 3966115 (-)
G328342 LOC108256401 other upstream 626862 7056794 ~ 7062428 (-)
sec61b sec61b,LOC102796100 other upstream 948799 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 3721565 10151497 ~ 10156800 (-)
G330185 NA other upstream 4092800 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 4493194 10923126 ~ 10930775 (-)

Expression


Co-expression Network