G327560


Basic Information

Item Value
gene id G327560
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 6083366 ~ 6084649 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU388102
GCAGAACTGTGCAAAAATAGAGGCCACCCAAAAATGTATGGCTCAAGTATTTATCGACTGAGCATTTATAAGGGCAATGAGTATTTGAATTACTATATAAcacttaattattttccaatcaaTATTAGTACAATAAAATTAAGTACAAGAAAATTTTGTGttctcaaaaaaacaaatacatcatGTGAGATGGATAGATGAACACCCTGATACACCCTAGCCTGCTCCACATGATAATTAAAACTTATTTGAAGACAGAAAATGCAGCGAAGGAGCCAAAACTTACTGCATCTAAGGCCATTTCCCAAAGGGACAAGAAGAAATATAGTCAAATGCTTGCTCAGTATCTGGCACAGAAACTTGGCACCAAAATCAATGAAGAATAGTGTTATTGCATGTGTTGCAGCAAAgcaaccactttttttttttttacatatagaCAAAGTATGAGACTATAAATCACGCTGAAACACTCTGTGGCAGAAAGTCTTAATAAGTGATGAGTCCAATTTTTGAGATGTTTTGTTCAGGAGCTGGTAAACACTGTGATGCGTGTCTGTAGGTTTCTGTGAATCATGGAGGTGATtcatagtgtttgtgtgtgtgcttgtgtgtgtgtgtgtttcagccagTGCTGTAAGGGATCTGCTGAAAATAGACTGATGAAGGCAGACAAATATAAAAAGGATTTGATTCCTCACACTATATCTTTGGGAAAATGACGTACACAGCTTCAGTCGTGCATTCTAAACATTGCTGTATCGATACTGATCCTGATAGTGTGTATCCATCTTAACACCATGTTCAATTCCTCGTACTTGTACCGATAACAGAATATACAagtgatatgatatgataagtGCCGTCTTATGGTGCTTGAACTGATAGAGTCGACCAGAGCGTGCAGAGCATTGGTCATTATACCATCTTAgaggagttcattgctagcagcacactGAAGCAATATAAACAGCTAAATAAATTTGTTCCATGACAACCCTGATAcacaatcACCGTTTATCTacaacttttgcacagtactttaTATCGCCTTTAAAATCCTAAAAGAGATCAAGGTTACTTGGTAACACTGCAGGTTTTCTGCAGTGTTTTCCTTCAAGCTCTGTTTGCCTTAGATATGACTTCTCCTTTATAGGGTGTCCTGGCCACTGCACTGGGTTTCCCAACCTGAAATTTAAATCACATCACATACATGACAAAATACTCACAAAATAACTC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines molecular_function

KEGG:

id description
ko00380 Tryptophan metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU388102 True 1239 lncRNA 0.37 2 6083366 6084649

Neighbor

gene id symbol gene type direction distance location
oxr1a oxr1 coding downstream 303973 5603689 ~ 5779393 (-)
zmp:0000000930 LOC108256382 coding downstream 521356 5554727 ~ 5562010 (-)
psma2 psma2,si:rp71-45k5.4,LOC108440756,LOC107592434,LOC107686300,LOC103045926,LOC107714337,LOC107724313,LOC108425697 coding downstream 537027 5541357 ~ 5546339 (-)
LOC113532747 atad2 coding downstream 542389 5522793 ~ 5540977 (-)
LOC113532914 LOC108256385,LOC108440755,LOC103044808 coding downstream 560821 5514842 ~ 5522545 (-)
LOC113532744 dcstamp coding upstream 692 6085341 ~ 6087808 (-)
rims2a rims2a,rims2,LOC108256727,LOC107095553,LOC107556969,LOC108438094 coding upstream 9382 6094031 ~ 6288364 (-)
dcaf13 dcaf13 coding upstream 206880 6291529 ~ 6302176 (-)
zmp:0000000951 LOC108256735 coding upstream 228875 6313524 ~ 6316258 (-)
rbm42 rbm42,LOC108438105,LOC107709618,LOC107686691 coding upstream 300434 6385083 ~ 6392314 (-)
G327508 NA non-coding downstream 245089 5837883 ~ 5838277 (-)
G327507 NA non-coding downstream 245584 5837489 ~ 5837782 (-)
G327505 NA non-coding downstream 247060 5836070 ~ 5836306 (-)
G327362 NA non-coding downstream 343778 5738537 ~ 5739588 (-)
G327100 NA non-coding downstream 689784 5392222 ~ 5393582 (-)
G328083 NA non-coding upstream 563647 6648296 ~ 6741046 (-)
G328215 tbrg4 non-coding upstream 946715 7031364 ~ 7032724 (-)
G328439 NA non-coding upstream 1292238 7376887 ~ 7378436 (-)
G328565 NA non-coding upstream 1363524 7448173 ~ 7448967 (-)
G328562 NA non-coding upstream 1365748 7450397 ~ 7452117 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 104987 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 1105839 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 1736113 4308606 ~ 4347253 (-)
vsig10l vsig10l other downstream 2117251 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 2286998 3720689 ~ 3796368 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 171754 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 972145 7056794 ~ 7062428 (-)
sec61b sec61b,LOC102796100 other upstream 1294082 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 4066848 10151497 ~ 10156800 (-)
G330185 NA other upstream 4438083 10522732 ~ 10523263 (-)

Expression


Co-expression Network