sec61b (sec61b,LOC102796100)


Basic Information

Item Value
gene id sec61b
gene name sec61b,LOC102796100
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7378731 ~ 7386347 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU389089
AGAAAAATAGCCCTCTCTTTACAGTCGCTTCATAGCCAGTGACCATCATTCTGCTCAGGTCTTAATCTTGAAAGCTCCCCAAAAAAGCTCAGAACAACATGCCTGGACCCGCAGCAAGCGCATCTAGCGTAGGCGCCTCCGGTCGCTCCCCCAGTAAGACGGTGGCCCCGAGAGCAGCAGGATCCACAGTCAGACAGAGgaaagCGACTGGCAGCGGTACACGGTCTGCAGGCAGAGCTACAGCATCAGCGGGTACAGGTGGCATGTGGCGCTTCTACACCGAGGACTCGCCAGGACTCAAAGTtGGCCCTGTGCCAGTGCTTGTAATGAGTCTGCTGTTCATCGCCTCCGTCTTCATGCTCCACATATGGGGAAAGTACACCCGCTCCTAAACCTCCTGACCTTTGAACTTTGACCTTCAAGTGATTATGAATTAAGCCATTGGACCTGGACCAAACTCTGACCCCATACAGCAAACCTGGTTCACCTGgtattttcatttcagaaaagtAAACAAGGTTTACTTCCCTGCTACAAGTTTtcatttgttcttcttctttcttttttttttttaatctggaaTAGGACATGTACATTTTTTGCTAACCTTTGTACAAA
>XM_026924706.2
CCTTCCTTGAGTTGTCGTGGCCTTTTCAGTAAATCGTCAGCAGAAAAATAGCCCTCTCTTTACAGTCGCTTCATAGCCAGTGACCATCATTCTGCTCAGGTCTTAATCTTGAAAGCTCCCCAAAAAAGCTCAGAACAACATGCCTGGACCCGCAGCAAGCGCATCTAGCGTAGGCGCCTCCGGTCGCTCCCCCAGTAAGACGGTGGCCCCGAGAGCAGCAGGATCCACAGTCAGACAGAGgaaagCGACTGGCAGCGGTACACGGTCTGCAGGCAGAGCTACAGCATCAGCGGGTACAGGTGGCATGTGGCGCTTCTACACCGAGGACTCGCCAGGACTCAAAGTtGGCCCTGTGCCAGTGCTTGTAATGAGTCTGCTGTTCATCGCCTCCGTCTTCATGCTCCACATATGGGGAAAGTACACCCGCTCCTAAACCTCCTGACCTTTGAACTTTGACCTTCAAGTGATTATGAATTAAGCCATTGGACCTGGACCAAACTCTGACCCCATACAGCAAACCTGGTTCACCTGgtattttcatttcagaaaagtAAACAAGGTTTACTTCCCTGCTACAAGTTTtcatttgttcttcttctttcttttttttttttaatctggaaTAGGACATGTACATTTTTTGCTAACCTTTGTACAAACGCTTCTGTAAAAttgtacaataataaaaaaaaaaaagaccacaaaATA

Function

symbol description
sec61b Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, translocation and posttranslational protein targeting to membrane, translocation. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be part of Sec61 translocon complex. Predicted to be active in membrane. Is expressed in axis; epithalamus; hatching gland; notochord; and polster. Orthologous to human SEC61B (SEC61 translocon subunit beta).

NR:

description
transport protein Sec61 subunit beta

GO: NA

KEGG:

id description
K09481 SEC61B, SBH2; protein transport protein SEC61 subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
TU389089 False 618 TUCP 0.48 4 7378780 7386306
XM_026924706.2 True 708 mRNA 0.47 4 7378731 7386347

Neighbor

gene id symbol gene type direction distance location
nr4a3 nr4a3 coding downstream 68719 7279561 ~ 7310012 (-)
stx17 stx17 coding downstream 109924 7248388 ~ 7268807 (-)
invs invs,LOC107596027,LOC107706121 coding downstream 154883 7185077 ~ 7223848 (-)
LOC113532705 LOC108256546,LOC100304805 coding downstream 224157 7141490 ~ 7154574 (-)
LOC113532854 LOC108256544,LOC100304805 coding downstream 241612 7124011 ~ 7137119 (-)
galnt1 galnt1,LOC107657719,LOC107723435 coding upstream 67527 7453874 ~ 7568606 (-)
tmem145 tmem145,LOC107706472,LOC107593664,LOC107723540,LOC107657707 coding upstream 200846 7587193 ~ 7614945 (-)
lipeb lipe coding upstream 234354 7620701 ~ 7646843 (-)
cd79a NA coding upstream 263244 7649591 ~ 7656996 (-)
arhgef1b arhgef1 coding upstream 272831 7659178 ~ 7702791 (-)
G328439 NA non-coding downstream 295 7376887 ~ 7378436 (-)
G328215 tbrg4 non-coding downstream 346007 7031364 ~ 7032724 (-)
G328083 NA non-coding downstream 637685 6648296 ~ 6741046 (-)
G327560 NA non-coding downstream 1294082 6083366 ~ 6084649 (-)
G327508 NA non-coding downstream 1540454 5837883 ~ 5838277 (-)
G328565 NA non-coding upstream 61826 7448173 ~ 7448967 (-)
G328562 NA non-coding upstream 64050 7450397 ~ 7452117 (-)
G328580 NA non-coding upstream 122522 7508869 ~ 7509107 (-)
G328588 NA non-coding upstream 172048 7558395 ~ 7558649 (-)
G328589 NA non-coding upstream 172337 7558684 ~ 7558963 (-)
G328342 LOC108256401 other downstream 316303 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 995143 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 1400352 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 2401204 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 3031478 4308606 ~ 4347253 (-)
LOC113541109 NA other upstream 2765150 10151497 ~ 10156800 (-)
G330185 NA other upstream 3136385 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 3536779 10923126 ~ 10930775 (-)
G330379 NA other upstream 3695921 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 4557707 11944054 ~ 11996700 (-)

Expression


Co-expression Network