tmem67 (tmem67)


Basic Information

Item Value
gene id tmem67
gene name tmem67
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7091541 ~ 7120969 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924579.2
GGGCGTTCCCTACACCGGAAGAGGCGGGGCTTACTCATGCGTTTTCTGTATCATGGCGACGGGGACGCTAAACTTCCCAGGGCTGTTTTACGGAAACCTTTTCgttttcttattaaattcaaaccCAATTTATTGTCAGCagttttctatttctttttcgCAACCGTTGGACTGTGGGGTCCAAAATTATTTTGACATTTCAAGCTTGACTTGTGTGAAGTGTGGACCGAACCAAGTCAGCAGTAAATCAGGTTTGAGCTGTGAGTGTCAGCCGGGTTTCAAGGTCCTGAGCAGCAACGGAGGATATATTACGTGCCAAAAGTGCACAGACACCAAACCGAGTGTTACGCAGGATGGATATGAATGTATCAGATGTCCAGGCGAACTGGGGGAGGATGGGAAGTGCCGGTGTCCTACAGGCAGTGTTCttgTGGAAAGAACTGTAAATGGCACGCCTCTCCAAGAAGCCCTGTGTGAGTTGTGTAATGGAACAGATCCAGCTTTTTCTTCGCCAGACACGAAAGGCAACAGATGTGTGAGATGTCAGGAATCCTTCATCAACACGTCTCAGACCTGCGCATGTGGTTCCAACATTctgGCTGGAGGAATGTGTTTCCCTCCCAACAACCTGCCCACTTCGGTCGTGTCCACAATCAATTTTGCTCAGTTGggccttgctgtTACTTCTGACTGGTTTTCTAGCTTCCTGTATTCTTCTGCAGCTGCATGTCTgTTGTTCACTAATCGGACAGCATGCCAGGCTCTGGggaacatgtgtgtgttgaacatGCACTCCTCAAGCACTATCAGCAACGATGCCTGTGGCCTGTACAACACCATCTACAGAGCAACAGCGGCGCAGGGCAACAACCAGGACAACCCGTACTGGAGGCTTAACCTGCCCTGGCTGTATTATGGAGAACAGCCAGGACTGGCATCAAGAGTTCTGCAGACTGAGCCGCTGCCTGTAGGATTCAGCTTTAAAGGCACAAACAAGAACACAAACTTAGAGCTACTGGCTGCAGTATACACAGCACAAGGAGAGTTTTTAAGATGGGAGAACGTTGGCAGAAAAAACCTGCAGCTTTGTCCGGATACCGTAACCAGAGAGCAGGCTGCATACACATTTGGGACGGCCTACAAGCAAACCTGTGTTCTCTCAGTGTTGGATCTCCTGGATGCTTATTCGGAGCCTCTGTTTTACGACATCTTCATGGTGCAGCAGAACACTGCGGGAGATACGCGCCTCCTCGCTGTGCCCATTCTCAATCTCATGCTGCAGTTAAATGGCCAGTTTGTCAACCAAGCCTCTAACATGAATAGCTGGTACCTGACACGAAGGCTGGTGATGATAGACACTTTGAGTGGGAGAGAAAAGAGACTGAGTTCCACCCCCAGAGTTATTCGTGTGGCCAATAACTTAAAAATTAGGTTCCAGCTGGTGCCAAACACCCAGAAAGGACAGGTGTACCCCCCTCTGATGACTGTGTCCTACTCTGATATTCTCATCACTGACCTGGCCAAGCAAACTGTACCTgtATCATTCTCTTTGGAGTATGAGATGGATCAGGAAGAAGCTCGAGTTAAAACCGATATTGCTCTGGGTGTGTTGGGTGGAGTCGCTGTTGTGTACTCTCTTTTGAAGACGGCAAGCTGGAAAAGAAGGATAGCCTCTCCCATCATTGACGTACAGACCATTTTGAAGTTCCTGCTGTTCTACGCTGGAGATTTGGcaaatgttttcttcttcatcactGTGGGAACTGGTCTGTACTGGCTCATTTTTTATAAGGCTCAGCAATTTGTGTCTGTATTGTTGCCATTACCAGCTCAAGAGGACCGTTTTGTGATATACGTTGGTTGTGCTTTTGCGCTTAagGCAGTGCAGTTCCTTCATGAGTTGTGGTTGCAGATGTCAGTGGATATATTCTTTATAGACTGGGAGAGACCTCGCAGTGGCAAGTCCAGTAAAAATGTAGAAGGGTGGGGTGAAGGAAAGAGCCCAGCACCTACAGTCAGCATCTGGAGAACGTACTTTGTGGCTAATGAATGGAACGAGATCCAGACCATTCGTAAGATCAACCCCACCTTCCAGATCATCTCTGTGCTCTTCTTTCTGGAGGTGGTGGGTTTCTCTAGCCTTGCATTGAGAGACCCTTCTTCAGAGCTTCAGCGCTCAGACGAGGGATACATACCTGCCTACAGCCGCATACTGCGCTACGGTGTGGCAGCTGCTGTGTGGCTCTGCATTGGTTTCATACAGATCATCTTCTTCTCAGTTTTCTATGAGCGCTTTGTGGAAGACAAGATTCGCCAGTTTGTGGATCTCTGCTCCATCAGCAACGTATCAGTGCTGCTGCTTTCTCTACGCTGCTTTGGCTATTACATCCACGGCCGATCTGTACATGGCCATGCCGACACTAACATGGAGGAAATGAACTCAAACCTGAAAAGAGAAGCGGAGAATCTTTGTGGCCAGAGAGGACTATTACCTAATTCTGACATTCAGACTTTTCAGATCTCCATAACAAGCCGTCTGAGGGCGCAGTATGATCGCATATTCGAGCCCCTCAGTAGAAGAAATGGGCCCTCGCGATTGATCGATGCCTCGGCCAACCCATTCGAGCAGAACACAAAAGCCTATCACACCATGAACCGCTTTCTCGCCTCTGTTATTGACCACGCTCATCGTGAGATGGATTACATTGTGAGAGATAAACTGCTCTTTGAAAGAATCATTGGAATGGAGTTCATTGAACCCCTGGACAAAAGCATTTTTTATAATGATGACTCTTACTCCTTTGCTGAGGTGCTTTTCTATGGGAACGAGGCAATGCTGTTGATCTTTGACACACTCTTTTTCTGCGTTGTTGATCTCGGCAGCCAGAACTACATTCTGGCGGCTGTACTAACATACGTACAGCAactgATCTTCAGACTGATCCGAAATGTCTCTGGTCGCAGGAACCTGGCCAGAAAAACTCTGGTTGACAAAAGATTCCTCATCTAActtacttctttatttatttttttccattttgccTTAGTGCCAGTTTTATTGTAGTTCTTTCTTTGCCAACTTTAATTCTCAAAGCAAGTTGTGTTTTGAtgcctttgtgtttttaatggatTTGTTGGGTTTGGACTAGATTTCTTTTTTAGATGCACGAAAGTTTATAGTTTGTAATTCTTGTGTAGCATACATAAAATTGAGTATTTTTCTACATCATTAATGACtgtattgattgattgattgattgattgttgtACAGTGTATAGAAATAAAATCCATGAAGATA

Function

symbol description
tmem67 Acts upstream of or within cilium assembly; cilium movement; and convergent extension. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Predicted to be active in ciliary transition zone. Used to study ciliopathy and meningocele. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome (multiple); COACH syndrome; Joubert syndrome 6; Meckel syndrome 3; and nephronophthisis 11. Orthologous to human TMEM67 (transmembrane protein 67).

NR:

description
PREDICTED: meckelin-like, partial

GO: NA

KEGG:

id description
K19348 TMEM67, MKS3; meckelin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924579.2 True 3299 mRNA 0.46 28 7091541 7120969

Neighbor

gene id symbol gene type direction distance location
LOC113532636 NA coding downstream 4676 7075199 ~ 7086865 (-)
glipr2l glipr2,glipr2l,LOC107706057,LOC107689891 coding downstream 20179 7066998 ~ 7071362 (-)
si:dkey-12j5.1 LOC108256403,LOC108426361 coding downstream 62114 6954760 ~ 7029427 (-)
LOC113532609 LOC108256720 coding downstream 142516 6944781 ~ 6949025 (-)
steap4 steap4 coding downstream 472868 6608684 ~ 6618673 (-)
LOC113532854 LOC108256544,LOC100304805 coding upstream 3042 7124011 ~ 7137119 (-)
LOC113532705 LOC108256546,LOC100304805 coding upstream 20521 7141490 ~ 7154574 (-)
invs invs,LOC107596027,LOC107706121 coding upstream 64108 7185077 ~ 7223848 (-)
stx17 stx17 coding upstream 127419 7248388 ~ 7268807 (-)
nr4a3 nr4a3 coding upstream 158592 7279561 ~ 7310012 (-)
G328215 tbrg4 non-coding downstream 58817 7031364 ~ 7032724 (-)
G328083 NA non-coding downstream 350495 6648296 ~ 6741046 (-)
G327560 NA non-coding downstream 1006892 6083366 ~ 6084649 (-)
G327508 NA non-coding downstream 1253264 5837883 ~ 5838277 (-)
G327507 NA non-coding downstream 1253759 5837489 ~ 5837782 (-)
G328439 NA non-coding upstream 255918 7376887 ~ 7378436 (-)
G328565 NA non-coding upstream 327204 7448173 ~ 7448967 (-)
G328562 NA non-coding upstream 329428 7450397 ~ 7452117 (-)
G328580 NA non-coding upstream 387900 7508869 ~ 7509107 (-)
G328588 NA non-coding upstream 437426 7558395 ~ 7558649 (-)
G328342 LOC108256401 other downstream 29113 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 707953 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 1113162 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 2114014 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 2744288 4308606 ~ 4347253 (-)
sec61b sec61b,LOC102796100 other upstream 257762 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 3030528 10151497 ~ 10156800 (-)
G330185 NA other upstream 3401763 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 3802157 10923126 ~ 10930775 (-)
G330379 NA other upstream 3961299 11082268 ~ 11083151 (-)

Expression


Co-expression Network