AMCG00002348 (LOC106928075,LOC100705239,LOC102211954,LOC103467007,LOC107092894,LOC101478036,LOC106947826,LOC105927147,LOC103150475)


Basic Information

Item Value
gene id AMCG00002348
gene name LOC106928075,LOC100705239,LOC102211954,LOC103467007,LOC107092894,LOC101478036,LOC106947826,LOC105927147,LOC103150475
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11787502 ~ 11790736 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002348
GAGAGATTCTGGGATAGCGGAAGACCCAGCGCTAtccaggcaggcaggcagaagTAATCGGCACTACCAAGATGTCGGCATTGTGTTTCTCCTTGAGAAGCGGATGTACGCTGCTCCGCAACCCGATGTGCCTAGCGTGGGTGCGGGGGGCGGCAGGGGCAGCGGCAGTGGGGGTGCAGCCATCTCCACGGATTAAGAAGTTTGCAGTGTATCGCTGGGACCCTGACACACCCGGAGACAAGCCCCGCATGCAGACCTACGAGATCGACCTCAACAGCTGCGGCCCCATGGTCCTGGATGCTCTGATCAAGATCAAGAACGAGATGGACGCCACGCTGACCTTCCGCCGGTCCTGCAGAGAGGgtATCTGTGGCTCCTGTGCGATGAACATTAATGGGGGGAATACGCTGGCCTGTACCATCAAGATTGACCCCGACACGAGCCGCTATAAATCTATTGAGCCATACCTGAAGAAGAAGGACGAATCTCAGATTGGGAAGGAGCAGTACCTACAGTCAGTGGAGGACCGTGACAAACTGGACGGTCTGTATGAGTGTATTCTGTGTGCGTGCTGCAGCACCAGCTGCCCCAGTTACTGGTGGAATGGAGACAAGTACTTGGGCCCAGCCGTGCTCATGCAGGCATATCGCTGGATGATCGACTCTCGGGACGACTTCACAGAGGAGCGACTGTCCAACCTGCAGGACCCCTTCAGCTTGTACCGGTGCCACACCATCATGAACTGCACCAAGACCTGCCCCAAGgGTCTGAACCCTGGAAAGGCGATTGCAGAGATTAAGAAGATGATGGCTGTGTACAAGGAGAAGAAATCGACCACAGCCTGAGAAGGAGGGGGGCTTCCAatccctgacctctgacctcttgACCCCCccttgaaaattaaattatctttattGACTTGTGATGACCTGTACACCTTCACCACTCCAACACCAACCCGCAAGGCctcagggagagggagagggagagggagagggagaggtagggAGACTTGGCACTGTGTGCAGATTGGGAGAGGaagatattaactgtaaatgtttcttATCAATAGTTGTTAATAAACTTGGGAACTTTAGCCCTTCAGGTGCTTATGCTCCTGGGCACGGCTGTAGAGAGCAGAGGGTGAGcaaaagtgagagagagagggagagctcTGTACTCTGCTGTACACTCTGCTCATATTTATCTCCATTACAATGCAAACTAGATTTCTCAGAAAATTTGAGAAAATCCTGTTGTTTCCTCCAGTTGCTTCTGCAGACTGAGCTTGTGGATCCTGTGTTATGAAGGCATTGGAGacattaataaaatcacaatggttttct

Function

NR:

description
PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0009055 electron transfer activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002348 True 1346 mRNA 0.52 8 11787502 11790736

Neighbor

gene id symbol gene type direction distance location
AMCG00002337 NA coding downstream 3864 11773596 ~ 11783638 (-)
AMCG00002338 NA coding downstream 15357 11767284 ~ 11772145 (-)
AMCG00002336 fbxo42,LOC107573139,LOC106565130 coding downstream 61551 11720216 ~ 11725951 (-)
AMCG00002335 NA coding downstream 76191 11708258 ~ 11711311 (-)
AMCG00002334 NA coding downstream 81807 11703336 ~ 11705695 (-)
AMCG00002346 NA coding upstream 9705 11800441 ~ 11803744 (-)
AMCG00002352 NA coding upstream 13318 11804054 ~ 11805639 (-)
AMCG00002347 NA coding upstream 24591 11815327 ~ 11821431 (-)
AMCG00002349 NA coding upstream 39736 11830472 ~ 11833823 (-)
AMCG00002345 NA coding upstream 73878 11864614 ~ 11869352 (-)
G122551 NA non-coding downstream 68533 11718530 ~ 11718969 (-)
G122548 NA non-coding downstream 71357 11714409 ~ 11716145 (-)
G122530 NA non-coding downstream 159067 11601972 ~ 11628435 (-)
G122438 NA non-coding downstream 337711 11449566 ~ 11449791 (-)
G122432 NA non-coding downstream 377916 11407524 ~ 11409586 (-)
G122632 NA non-coding upstream 53656 11844392 ~ 11845671 (-)
G122633 NA non-coding upstream 56345 11847081 ~ 11848192 (-)
G122636 NA non-coding upstream 66655 11857391 ~ 11859325 (-)
G122621 NA non-coding upstream 72167 11862903 ~ 11864056 (-)
G122726 NA non-coding upstream 252579 12043315 ~ 12045019 (-)
G122597 NA other downstream 53178 11731617 ~ 11734324 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 102413 11647911 ~ 11685089 (-)
AMCG00002317 plekhm2 other downstream 259584 11514000 ~ 11527918 (-)
AMCG00002301 NA other downstream 940301 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1507518 10269889 ~ 10279984 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 57734 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 78871 11869607 ~ 11872862 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 205092 11995828 ~ 12006352 (-)
G122862 NA other upstream 1237461 13028197 ~ 13029406 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 1858491 13649227 ~ 13654247 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1475485 sdhb non-coding NC_048581.1 CM023235.2 64126850 ~ 64128340 (-)