RNA id: TU153768


Basic Information

Item Value
RNA id TU153768
length 1773
lncRNA type sense_over
GC content 0.47
exon number 1
gene id AMCG00002351
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11869607 ~ 11872862 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGGTTCTGGCTCAGCTGCTCGTGGAATGGTTCATACTCGGAGCTGCAGTGTGATGGTGTAGCACTGGGCGCCGGCTGCCGTGACTTTCTGCTGACCGAGCTGCAGGACAGTGTGCCATACCGCGTGTGCCTGCGCCCCGCCTCCGGCAACAGCCCCAGCAGCACAGACTGCCTGGAGTTCTCTCTGCGCCCCCCTGCTGTGCAGGAGCTGGTAGTGGCCATGACGGCGGTGGGCGGGGCCATCTGTGTGATGCTGGTGGTCATCTGCTTGCTGGTTGCCTACATCACTGAGAATCTCATGAACcccaataacacacacacacacacaccacacacacatacgcacacgcCACACACGCACTGTTCGCATAGTcatcctgcacacacacacgcacacgcacatgatgacacactgactcactgacacagtGATGCTGCAGGCAAACTCGCCCACACTGACACTAGTgctaacacactgacacactgacgtACAGTGTGTGAGAACCAGAGAGACTGCAGGAAGTGAGGTCTCAGGCCTGGACTCGAGTAGAGGGGAATACTGCAAAATACTGCACAATACTGCACAAAACTGCAGCAATGATTGGCctcctcaaaatataatttagataCATTGCAATAAAACgaacactttaaatacatttttgaaatatatctAAAACACACgctgtgttgtgttgatgtAGGTGGAGTGTCTGAGTACACCTCACATACAGGGGCGTCTCACAGCCTGGCCTTTGGAAAGTGTGTTCAGTATATCttccattttgtcattttctcaATATTGCAATGTGTGATGCCTCACTGTGTCTCACTGTGGCTCAGTGTATatgtcagtgcatcagtgtgtgtcagtgtggtagGTTGGTCTTGTCCATAGACAATAGTATAGAGCAGGACCAGAGTCAGCTATATACTGATAGTACACAGTTCATGTGTTGTATCTAGCTTCACACAGGGTAGTCTAACACTGTGctatagacagatagatatgtAACTGATAAGTGTAGGTAATTAGAGAATAGATAAGTAGATTCATAATTAGTTAAGTAAATATATAAGGAAATAAGAGTATATAGTGTCTATATACATTAGAACACAGTAGATAGATAAGTATATATACAGCTAGAGAGATGAGTATAGAAATTGATTGATATATAGATAACAGTGTCGATCTACAGTCCAAGTTCATTGTGATTGGGTTCTGGTTTGTaaaaggacagacagacagcagcctgggCTGTGCTGGGACCCTGTGTGGATCCTCACAGACCAGTGTGTGCAGGGTCTCCAGTGTGTGCAGCCGAGAGGTGCTGATGCTGTGGCTCACTGTGCCACTTTCAGActgtgtgttcctgtgtgtcagtgtgtaaatcagtttgtgtcagtgtgattGGATTAGtctgagtgtgtcagtgtatccaTGTGCCTGTTTCAGAGTGTCAGAGTGTGTCAGTGGAAATCCAAGTACACTGTGAGCCCTGCCccatgtcagtgtgtcagtgtgagtgtccAGCGCACTGTGAGCCCTGCCCTGTGACCTGTCCCCATACAGCTCAACAGGCAGACTGAACTCGTGACAATCCTCCCCCATCATACCCTGATGTGTATATAGCTATAGATATTGATGTAGATATAGAGATAGaggtatatattgtttactgtatattgtatattgtacatGTGGAGCCGACTCCCTATTTCTGTACCTGACCACACAGCCTTCACAGTAAATAAAGGACATTGCTGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153748 lncRNA downstream 5551 11862903 ~ 11864056 (-) True G122621
TU153766 lncRNA downstream 10282 11857391 ~ 11859325 (-) True G122636
TU153762 lncRNA downstream 21415 11847081 ~ 11848192 (-) True G122633
TU153761 lncRNA downstream 23936 11844392 ~ 11845671 (-) True G122632
TU153668 lncRNA downstream 150638 11718530 ~ 11718969 (-) True G122551
TU153878 lncRNA upstream 171936 12043315 ~ 12045019 (-) True G122726
TU153975 lncRNA upstream 324541 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA upstream 370742 12242121 ~ 12243914 (-) True G122801
TU154042 lncRNA upstream 1129462 13000841 ~ 13005335 (-) True G122858
TU154056 lncRNA upstream 1180647 13052026 ~ 13052390 (-) True G122869
AMCG00002345 mRNA downstream 255 11864614 ~ 11869352 (-) True AMCG00002345
AMCG00002350 mRNA downstream 15982 11851517 ~ 11853625 (-) False AMCG00002350
AMCG00002349 mRNA downstream 35784 11830472 ~ 11833823 (-) True AMCG00002349
AMCG00002347 mRNA downstream 48176 11815327 ~ 11821431 (-) True AMCG00002347
AMCG00002352 mRNA downstream 63968 11804054 ~ 11805639 (-) True AMCG00002352
AMCG00002357 mRNA upstream 10694 11882073 ~ 11892699 (-) True AMCG00002357
AMCG00002358 mRNA upstream 34531 11905910 ~ 11913015 (-) True AMCG00002358
AMCG00002359 mRNA upstream 41731 11913110 ~ 11918100 (-) True AMCG00002359
AMCG00002368 mRNA upstream 124647 11996026 ~ 12006352 (-) False AMCG00002368
AMCG00002367 mRNA upstream 184262 12055641 ~ 12060552 (-) True AMCG00002367
TU153763 other downstream 14716 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 135283 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 184518 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 342252 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 2016532 9842095 ~ 9853075 (-) False AMCG00002279
TU153773 other upstream 483 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 124449 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1156818 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 1156818 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 1777849 13649228 ~ 13654236 (-) False AMCG00002421

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040861 False 1653 mRNA 0.53 2 NC_007133.7 370915 ~ 372723 (-)