RNA id: AMCG00002347


Basic Information

Item Value
RNA id AMCG00002347
length 1536
RNA type mRNA
GC content 0.64
exon number 6
gene id AMCG00002347
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11815327 ~ 11821431 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCCCCGGGGGCTCCGGctgtggctgtggctgtggGGCTGTGTGGGGCTGCGGCTGGCGGCCCCGCAGGATGCGGAAGGTGTACCTGAGCCAGggTGCTGTGAGGGGGAGCTGCTGTTCCTGGTTGACTCCTCAGGCAGTGTGTCGTCCTATGAGTTCTTACGCCTGCGGTCCTTCTTGGGGGAGCTGATGAGCCCCTTCCAGCTGGGCGGGAAGGGGCCGGGAGTCGGTGGAGTCCGTGTGGGGTTGGTGCAGGTGGGCACAGAGCCACGACTGGAGTTTGGACTAGACGAACATGCTGACCAGGCCAGCCTGCAGAGGGCGATAGCGGCACTGGAGCAGCTGGGCGGAGACACTAACACCGCCAGCGCTCTGGAATTGGTCTGGGAACGCGTGCTGGCCCCGGGGTGGGGCCCAGGGAAGGCGCGGCAAGGGCTGCCCCGCGTGCTGGTGTGGCTAACGGATGGAGTGCTGTCCGACCCTGTGCTAAAGCCCATGGCCAGGCTGCGTGAGGACGGCGTGGCCGTGCTGGCTGTCTCCACTGGACACGGAAACTACCAGTACCTCAGCAGTGTGGTCACCCCCCCCTCACATCGCCACCTCTACTTCATTGACATTGACCACATGTCCATTATCACTGCAGAGCTGCGGCAGGCAATCATAGACCTGTTGCGAGTGGCACGTCTGTGGGTGACGGACGTGGGGCAGCacagtgctgtgctgcagtggcATCCGGTTCTAGAGGGTGAGGGTGGGTTTTACCAGGTGCTGGTGGAGCAGCAGGGGGGCCTGTCGGGGTCACAGCGCACCCTGACTCTAGACGCAGACGCCAGCTCCGTCCAGCTGACTGACCTGCAGCCAGACACAATCTACAGTGCCACCCTCATCCCCGAGAGCAACCAGCGCTACCACCCCCCCCTCAACACCACCTTCACCACACTGTCTGAGGAGCTCAGTCCAGTCTGGGTACAGGTGTCAGAGTCCAGCCCACACAGTGTGCAGCTGAGCTGGGGACCGGTGCAGCCCGGCTCAGTGCAGAGGTACCAGGTGCAGTACAGCACGCTGCCCCGTGGGGAGGTCCGGACCGTGGAATTGGACCCACTCCAGAACCATACTGTACTAACGGACCTGCAGCCCGACGCACAGTACCTGGTGACCGTGAGCGCAATGCACAACTCTGGCCAGGAGAGGGCACTGTCAGTCAAGGCCTGCACACAGGAGGtgctccCCGCCCTGTCAGACTTGCAGTTGACCCCAGTTGGGGTGGATGCGGTCCGTGTGTCTTGGCGGGGGGGTGAAGGGGGGGTGCGTGGCTactggctgagctgggagacagaGTACCTGCCCGGCCCCCCTTCCTCCCGCCTCCTGCCCCCAAACTCCCTGTCCACCTTGCTAAGTGacctgcccccccacacccGCGTCTGTGTCTCCCCTGTGTATAAAAGTGCCCGTGGACAGGGGCTATGCTGCACTGCAAACCTAGACACAGACTCTGTGCCCTGGGGCTTCAGAACTCACACCAATCCCTGA

Function

GO: NA

KEGG:

id description
K24507 VWA1; von Willebrand factor A domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153668 lncRNA downstream 96358 11718530 ~ 11718969 (-) True G122551
TU153665 lncRNA downstream 99182 11714409 ~ 11716145 (-) True G122548
TU153646 lncRNA downstream 186892 11601972 ~ 11628435 (-) True G122530
TU153524 lncRNA downstream 365536 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 405741 11407524 ~ 11409586 (-) True G122432
TU153761 lncRNA upstream 22961 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 25650 11847081 ~ 11848192 (-) True G122633
TU153766 lncRNA upstream 35960 11857391 ~ 11859325 (-) True G122636
TU153748 lncRNA upstream 41472 11862903 ~ 11864056 (-) True G122621
TU153768 lncRNA upstream 48176 11869607 ~ 11871379 (-) True AMCG00002351
AMCG00002352 mRNA downstream 9688 11804054 ~ 11805639 (-) True AMCG00002352
AMCG00002346 mRNA downstream 11583 11800441 ~ 11803744 (-) True AMCG00002346
AMCG00002348 mRNA downstream 24591 11787502 ~ 11790736 (-) True AMCG00002348
AMCG00002337 mRNA downstream 31689 11773596 ~ 11783638 (-) True AMCG00002337
AMCG00002338 mRNA downstream 43182 11767284 ~ 11772145 (-) True AMCG00002338
AMCG00002349 mRNA upstream 9041 11830472 ~ 11833823 (-) True AMCG00002349
AMCG00002350 mRNA upstream 30086 11851517 ~ 11853625 (-) False AMCG00002350
AMCG00002345 mRNA upstream 43183 11864614 ~ 11869352 (-) True AMCG00002345
AMCG00002351 mRNA upstream 49673 11871104 ~ 11872276 (-) False AMCG00002351
AMCG00002357 mRNA upstream 60642 11882073 ~ 11892699 (-) True AMCG00002357
TU153720 other downstream 81003 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 130238 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 287972 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1962252 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1982103 9831911 ~ 9833224 (-) True AMCG00002276
TU153763 other upstream 27039 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 50431 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 174397 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1206766 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 1206766 13028197 ~ 13029406 (-) True G122862

Expression Profile