RNA id: CI01000050_00818849_00822703.mRNA


Basic Information

Item Value
RNA id CI01000050_00818849_00822703.mRNA
length 1456
RNA type mRNA
GC content 0.51
exon number 2
gene id CI01000050_00818849_00822703
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 818849 ~ 823139 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAGCAGAGCCGCGGAGAGACCTGCGTGCTCGCGGGATCTAACGGACTGAATGGAACGAGGTCATCGGGAGTCGAGCGTGACCGCAGCGGCCAGCCTTCCCGCGTGGCCGGGATGGCGTTGGACATGCGGGGCAAGTGCGCGGCGTACGTGTTGGCCCTGAGGCCGTGGAGTTTCAGCGCCTCACTCACGCCTGTGGCTCTGGGCAGCGCTCTGGCCTACAAACTGGAGGGGTCGGTGGACCTCCTGGTTCTCCTGGTCTGTGCCGTGGCGGTTCTGGTGGTTCATGGTGCAGGGAACCTGGTGAACACCTACTATGATTTCTCCAAGGGAATCGATCACAAGAAGAGCGACGACAGGACTCTGGTGGATCAGATCCTGAAGCCGCAGGACGTGGTGATGTTTGGGGCGGTGTTGTACTCGGCAGGATGTCTCTGTGCCACGCTGCTCTACTTCCTGTCCACCCTGAAACTAGAGCACTTAGCTCTCATTTACTTCGGAGGACTGTCCAGCTCTTTTTTATACACTGGAGGCATCGGACTGAAGTACGTTGCTCTGGGCGACGTGGTCATCCTCATCACCTTCGGTCCTCTGGCGGTGATGTTCGCTCACGCTGTGCAGGTGGGCTACCTGTCGGTGCTGCCGCTGGTGTACGCCGTGCCGCTGGCGCTCAACACCGAAGCCATCCTGCACAGCAACAACACCCGAGACATGGACTCGGACAAGCAGGCGGGCATCGTCACCCTGGCCATCCTGGTGGGGCCCACGCTGTCCTACGTCATCTACAACTTGCTGCTCTTCGTCCCCTATCTGCTGTTCTGCATCTTAGCCACGCGCTACACCATTAGCATGGCTCTGCCGCTGCTGACGCTGCCCATGGCCTTTCCTCTCGAGAGGCAGTTCCGTCGGCAGTGTTACGCCAAGATCCCACAAAAGACTGCCAAGCTCAATTTGCTCATGGGACTCTTCTACGTTTTCGGGATTATTTTGGCACCGCAGGGTAGCTTGCCGTTATTGTGAAAGAACTAGAACTTTTGTCCTATTCGTTTTAAACAACTCTAGATACTTTTGTATTTATAGTAATGTTAATCTAAAATTCAAAGACTTTAATTTATTGTGGTTTATTTATGTTTTCGGAGTGGGCGAGTGCTCTCGTGCAGCGCTAAAGGTTCATAGACTGTCCGGTACGTCAGTATTGTAAAAAGAGACCAGTCTGTAAATGAAGAAGCACATACATACACACACATTATATATATATATATATATATATATATATATATATTTATAAAACCACGATATCATCTTCCTTGTCAATTCTCAAGTAGCAGCTCTTCAGTTCTGTGTCCATGTCTGCTCAGATTTGCCTAAAAACATGGTGGTCAGTTGGTGAGTGTTTTAATGAGGGAATCTTTAGTTTTTTAGGTTTAGTGCCATTGACTTGCAGGGTTTTTGCCAA

Function

GO:

id name namespace
GO:0008412 4-hydroxybenzoate octaprenyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240614 lncRNA upstream 54414 763998 ~ 764435 (+) True G212104
TU240794 lncRNA upstream 72271 745947 ~ 746578 (+) True G212269
TU240786 lncRNA upstream 154700 663684 ~ 664149 (+) True G212261
TU240785 lncRNA upstream 156401 661614 ~ 662448 (+) True G212260
TU240623 lncRNA upstream 159636 658564 ~ 659213 (+) True G212113
TU240818 lncRNA downstream 3665 826804 ~ 827128 (+) True G212293
TU240819 lncRNA downstream 4679 827818 ~ 828085 (+) True G212294
TU240821 lncRNA downstream 86674 909813 ~ 910029 (+) True G212296
TU240899 lncRNA downstream 348995 1172134 ~ 1176043 (+) True G212366
TU240910 lncRNA downstream 372886 1196025 ~ 1201801 (+) True G212376
CI01000050_00770066_00782851.mRNA mRNA upstream 35877 770066 ~ 782972 (+) True CI01000050_00770066_00782851
CI01000050_00753574_00762446.mRNA mRNA upstream 56082 752374 ~ 762767 (+) True CI01000050_00753574_00762446
CI01000050_00718711_00742201.mRNA mRNA upstream 76648 718711 ~ 742201 (+) True CI01000050_00718711_00742201
CI01000050_00678001_00716978.mRNA mRNA upstream 101871 677899 ~ 716978 (+) True CI01000050_00678001_00716978
CI01000050_00648100_00653861.mRNA mRNA upstream 164976 648100 ~ 653873 (+) True CI01000050_00648100_00653861
CI01000050_00851621_00899726.mRNA mRNA downstream 28387 851526 ~ 901164 (+) True CI01000050_00851621_00899726
CI01000050_00916485_00921744.mRNA mRNA downstream 93346 916485 ~ 921744 (+) True CI01000050_00916485_00921744
CI01000050_00931338_00939002.mRNA mRNA downstream 108199 931338 ~ 939002 (+) True CI01000050_00931338_00939002
CI01000050_00967544_00997883.mRNA mRNA downstream 144405 967544 ~ 997883 (+) True CI01000050_00967544_00997883
CI01000050_01002924_01005496.mRNA mRNA downstream 179785 1002924 ~ 1005514 (+) True CI01000050_01002924_01005496
TU240705 other upstream 384643 433684 ~ 434206 (+) True G212184
TU240505 other upstream 680838 82604 ~ 138011 (+) True G212006
TU240463 other upstream 792437 22484 ~ 26412 (+) True CI01000050_00012155_00026251
TU240937 other downstream 473507 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 868664 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 1951700 2774839 ~ 2775133 (+) True G212927
TU241503 other downstream 2019680 2842819 ~ 2843139 (+) True G212938
TU243391 other downstream 2982004 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071883 True 2232 mRNA 0.47 3 NC_007119.7 53918234 ~ 53926228 (-)
bowfin (Amia calva) AMCG00002248 True 2588 mRNA 0.43 3 CM030136.1 9018607 ~ 9022271 (-)