RNA id: TU240614


Basic Information

Item Value
RNA id TU240614
length 438
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G212104
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 763998 ~ 764435 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTCCCGCATTTTCACTCCATTGGCTGAGACTGATTTTAACACTTCTACATGTATGATCAGGAAATATTCCTGTGTCCCTCCCTCTCATAGCCTCTCTTTCATAGTAGATAGGTCCATCATTTTGAGTTAAATGTGTTCAAAAGTCACTACCAAACACCTTTTTTCTGCAATTTCTGTTATTCGATAAAATGTAGTTTTTATGTGTGTACAACTGTTCAGAGCTGTGTTAGCTAACCATGTGCTGATTAGCATCTAAAATTGTCACATCCGAAACTTCTCAACATGTTTTTTTAATTTATTTTTTTAATTCAATGCCACAAGAACAAGACTTCTCGACATGTTTCAGCCGTGACTGTTTTGGTAGTGACATCATTGTTTTGTTAGTGACAAAAGGGAACACATAATCATTTATTTGAGGAAAATAAACACAATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240794 lncRNA upstream 17420 745947 ~ 746578 (+) True G212269
TU240786 lncRNA upstream 99849 663684 ~ 664149 (+) True G212261
TU240785 lncRNA upstream 101550 661614 ~ 662448 (+) True G212260
TU240623 lncRNA upstream 104785 658564 ~ 659213 (+) True G212113
TU240782 lncRNA upstream 116711 647082 ~ 647287 (+) True G212257
TU240818 lncRNA downstream 62369 826804 ~ 827128 (+) True G212293
TU240819 lncRNA downstream 63383 827818 ~ 828085 (+) True G212294
TU240821 lncRNA downstream 145378 909813 ~ 910029 (+) True G212296
TU240899 lncRNA downstream 407699 1172134 ~ 1176043 (+) True G212366
TU240910 lncRNA downstream 431590 1196025 ~ 1201801 (+) True G212376
CI01000050_00753574_00762446.mRNA mRNA upstream 1231 752374 ~ 762767 (+) True CI01000050_00753574_00762446
CI01000050_00718711_00742201.mRNA mRNA upstream 21797 718711 ~ 742201 (+) True CI01000050_00718711_00742201
CI01000050_00678001_00716978.mRNA mRNA upstream 47020 677899 ~ 716978 (+) True CI01000050_00678001_00716978
CI01000050_00648100_00653861.mRNA mRNA upstream 110125 648100 ~ 653873 (+) True CI01000050_00648100_00653861
CI01000050_00615170_00641706.mRNA mRNA upstream 122224 615170 ~ 641774 (+) True CI01000050_00615170_00641706
CI01000050_00770066_00782851.mRNA mRNA downstream 5631 770066 ~ 782972 (+) True CI01000050_00770066_00782851
CI01000050_00818849_00822703.mRNA mRNA downstream 54414 818849 ~ 823139 (+) True CI01000050_00818849_00822703
CI01000050_00851621_00899726.mRNA mRNA downstream 87091 851526 ~ 901164 (+) True CI01000050_00851621_00899726
CI01000050_00916485_00921744.mRNA mRNA downstream 152050 916485 ~ 921744 (+) True CI01000050_00916485_00921744
CI01000050_00931338_00939002.mRNA mRNA downstream 166903 931338 ~ 939002 (+) True CI01000050_00931338_00939002
TU240705 other upstream 329792 433684 ~ 434206 (+) True G212184
TU240505 other upstream 625987 82604 ~ 138011 (+) True G212006
TU240463 other upstream 737586 22484 ~ 26412 (+) True CI01000050_00012155_00026251
TU240937 other downstream 532211 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 927368 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 2010404 2774839 ~ 2775133 (+) True G212927
TU241503 other downstream 2078384 2842819 ~ 2843139 (+) True G212938
TU243391 other downstream 3040708 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793

Expression Profile