RNA id: TU240782


Basic Information

Item Value
RNA id TU240782
length 206
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G212257
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 647082 ~ 647287 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAACTCTGATTCTTCATGTGGCTTTCTCTTTTACCACCTGCATTATCATGGTGGTTGTCAATATATGTTAAAGGTACAAAACAGATTTTAGTAGTAGTGTGCATTGTTGAATTTACTTGTTTACATTCAAATTTTCTTGTTTGTAAATTACAGTTTTATACTGTAAAATTGACAGTTTGTTCTGTAAATGTGTTTACAGTTTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240617 lncRNA upstream 97826 549023 ~ 549256 (+) True G212107
TU240759 lncRNA upstream 106222 540120 ~ 540860 (+) True G212234
TU240754 lncRNA upstream 111994 534848 ~ 535088 (+) True G212230
TU240750 lncRNA upstream 115900 530978 ~ 531182 (+) True G212226
TU240749 lncRNA upstream 116132 530731 ~ 530950 (+) True G212225
TU240623 lncRNA downstream 11277 658564 ~ 659213 (+) True G212113
TU240785 lncRNA downstream 14327 661614 ~ 662448 (+) True G212260
TU240786 lncRNA downstream 16397 663684 ~ 664149 (+) True G212261
TU240794 lncRNA downstream 98660 745947 ~ 746578 (+) True G212269
TU240614 lncRNA downstream 116711 763998 ~ 764435 (+) True G212104
CI01000050_00615170_00641706.mRNA mRNA upstream 5308 615170 ~ 641774 (+) True CI01000050_00615170_00641706
CI01000050_00457216_00463632.mRNA mRNA upstream 183436 456930 ~ 463646 (+) True CI01000050_00457216_00463632
CI01000050_00449181_00451580.mRNA mRNA upstream 195035 449181 ~ 452047 (+) True CI01000050_00449181_00451580
CI01000050_00376389_00376735.mRNA mRNA upstream 270118 376217 ~ 376964 (+) True CI01000050_00376389_00376735
CI01000050_00302983_00357876.mRNA mRNA upstream 288790 302983 ~ 358292 (+) True CI01000050_00302983_00357876
CI01000050_00648100_00653861.mRNA mRNA downstream 813 648100 ~ 653873 (+) True CI01000050_00648100_00653861
CI01000050_00678001_00716978.mRNA mRNA downstream 30612 677899 ~ 716978 (+) True CI01000050_00678001_00716978
CI01000050_00718711_00742201.mRNA mRNA downstream 71424 718711 ~ 742201 (+) True CI01000050_00718711_00742201
CI01000050_00753574_00762446.mRNA mRNA downstream 105087 752374 ~ 762767 (+) True CI01000050_00753574_00762446
CI01000050_00770066_00782851.mRNA mRNA downstream 122779 770066 ~ 782972 (+) True CI01000050_00770066_00782851
TU240705 other upstream 212876 433684 ~ 434206 (+) True G212184
TU240505 other upstream 509071 82604 ~ 138011 (+) True G212006
TU240463 other upstream 620670 22484 ~ 26412 (+) True CI01000050_00012155_00026251
TU240937 other downstream 649359 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 1044516 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 2127552 2774839 ~ 2775133 (+) True G212927
TU241503 other downstream 2195532 2842819 ~ 2843139 (+) True G212938
TU243391 other downstream 3157856 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793

Expression Profile