RNA id: TU240754


Basic Information

Item Value
RNA id TU240754
length 241
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G212230
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 534848 ~ 535088 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAGGATTTGAGAGATGCTGTTGTTGTTGCAGAGTTTAACACTTCAAAAGAACAGTCTCATCAAGCCCACATATACAATCACAAAAATAAGTTGATGACATGGTCCTATTAGCCAATAAAAGTGAACGCGGCAAGCGCAAACTTTCAGACAAATGGGAAAATGTGGTATATACTGTGGTTGATTGTGATCCTAAAACCCACATTTACAAGATTAAACACCCTGTATCTGGTCAGTTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240750 lncRNA upstream 3666 530978 ~ 531182 (+) True G212226
TU240749 lncRNA upstream 3898 530731 ~ 530950 (+) True G212225
TU240710 lncRNA upstream 67478 466594 ~ 467370 (+) True G212188
TU240712 lncRNA upstream 68488 465703 ~ 466360 (+) True G212190
TU240706 lncRNA upstream 99336 435237 ~ 435512 (+) True G212185
TU240759 lncRNA downstream 5032 540120 ~ 540860 (+) True G212234
TU240617 lncRNA downstream 13935 549023 ~ 549256 (+) True G212107
TU240782 lncRNA downstream 111994 647082 ~ 647287 (+) True G212257
TU240623 lncRNA downstream 123476 658564 ~ 659213 (+) True G212113
TU240785 lncRNA downstream 126526 661614 ~ 662448 (+) True G212260
CI01000050_00457216_00463632.mRNA mRNA upstream 71202 456930 ~ 463646 (+) True CI01000050_00457216_00463632
CI01000050_00449181_00451580.mRNA mRNA upstream 82801 449181 ~ 452047 (+) True CI01000050_00449181_00451580
CI01000050_00376389_00376735.mRNA mRNA upstream 157884 376217 ~ 376964 (+) True CI01000050_00376389_00376735
CI01000050_00302983_00357876.mRNA mRNA upstream 176556 302983 ~ 358292 (+) True CI01000050_00302983_00357876
CI01000050_00274836_00275609.mRNA mRNA upstream 258411 274695 ~ 276437 (+) True CI01000050_00274836_00275609
CI01000050_00615170_00641706.mRNA mRNA downstream 80082 615170 ~ 641774 (+) True CI01000050_00615170_00641706
CI01000050_00648100_00653861.mRNA mRNA downstream 113012 648100 ~ 653873 (+) True CI01000050_00648100_00653861
CI01000050_00678001_00716978.mRNA mRNA downstream 142811 677899 ~ 716978 (+) True CI01000050_00678001_00716978
CI01000050_00718711_00742201.mRNA mRNA downstream 183623 718711 ~ 742201 (+) True CI01000050_00718711_00742201
CI01000050_00753574_00762446.mRNA mRNA downstream 217286 752374 ~ 762767 (+) True CI01000050_00753574_00762446
TU240705 other upstream 100642 433684 ~ 434206 (+) True G212184
TU240505 other upstream 396837 82604 ~ 138011 (+) True G212006
TU240463 other upstream 508436 22484 ~ 26412 (+) True CI01000050_00012155_00026251
TU240937 other downstream 761558 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 1156715 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 2239751 2774839 ~ 2775133 (+) True G212927
TU241503 other downstream 2307731 2842819 ~ 2843139 (+) True G212938
TU243391 other downstream 3270055 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793

Expression Profile