RNA id: CI01000050_00648100_00653861.mRNA


Basic Information

Item Value
RNA id CI01000050_00648100_00653861.mRNA
length 387
RNA type mRNA
GC content 0.58
exon number 3
gene id CI01000050_00648100_00653861
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 648100 ~ 653873 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGGAGACTGGAGCAGTGTTCGCAACCGAACAGGTCAGTGCGCTCCGCCGCTGTCTCCGGTCATCGGGACTCTGAAGCTGGTGTCCGGCGACGGCACTAGCGTGGGCAGCGTGATGAGCCTGCAGTGCCCGAGCAGACACCGCGCGGTCAGCGGCACTCAGATGGCCTGCGTGTGGAGCAGTAACAACACGCGCTGGAGCGGAGGAACACCCGAGTGCAGACCTTTGTCTCGGTTCGAGGACGAGGGCTTTCGTTTAGCTCTTCTCATGTCCTTCATCAGTGCCGCCATCATTCTCTTGATGAGCATCATCTTCATCACTTCCTGTCTGGTGAAACATGTGAAGCGAGAGGAGAGGAGAAAGATGGAGAGGTGAGAGAACCTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240782 lncRNA upstream 813 647082 ~ 647287 (+) True G212257
TU240617 lncRNA upstream 98844 549023 ~ 549256 (+) True G212107
TU240759 lncRNA upstream 107240 540120 ~ 540860 (+) True G212234
TU240754 lncRNA upstream 113012 534848 ~ 535088 (+) True G212230
TU240750 lncRNA upstream 116918 530978 ~ 531182 (+) True G212226
TU240623 lncRNA downstream 4691 658564 ~ 659213 (+) True G212113
TU240785 lncRNA downstream 7741 661614 ~ 662448 (+) True G212260
TU240786 lncRNA downstream 9811 663684 ~ 664149 (+) True G212261
TU240794 lncRNA downstream 92074 745947 ~ 746578 (+) True G212269
TU240614 lncRNA downstream 110125 763998 ~ 764435 (+) True G212104
CI01000050_00615170_00641706.mRNA mRNA upstream 6326 615170 ~ 641774 (+) True CI01000050_00615170_00641706
CI01000050_00457216_00463632.mRNA mRNA upstream 184454 456930 ~ 463646 (+) True CI01000050_00457216_00463632
CI01000050_00449181_00451580.mRNA mRNA upstream 196053 449181 ~ 452047 (+) True CI01000050_00449181_00451580
CI01000050_00376389_00376735.mRNA mRNA upstream 271136 376217 ~ 376964 (+) True CI01000050_00376389_00376735
CI01000050_00302983_00357876.mRNA mRNA upstream 289808 302983 ~ 358292 (+) True CI01000050_00302983_00357876
CI01000050_00678001_00716978.mRNA mRNA downstream 24026 677899 ~ 716978 (+) True CI01000050_00678001_00716978
CI01000050_00718711_00742201.mRNA mRNA downstream 64838 718711 ~ 742201 (+) True CI01000050_00718711_00742201
CI01000050_00753574_00762446.mRNA mRNA downstream 98501 752374 ~ 762767 (+) True CI01000050_00753574_00762446
CI01000050_00770066_00782851.mRNA mRNA downstream 116193 770066 ~ 782972 (+) True CI01000050_00770066_00782851
CI01000050_00818849_00822703.mRNA mRNA downstream 164976 818849 ~ 823139 (+) True CI01000050_00818849_00822703
TU240705 other upstream 213894 433684 ~ 434206 (+) True G212184
TU240505 other upstream 510089 82604 ~ 138011 (+) True G212006
TU240463 other upstream 621688 22484 ~ 26412 (+) True CI01000050_00012155_00026251
TU240937 other downstream 642773 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 1037930 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 2120966 2774839 ~ 2775133 (+) True G212927
TU241503 other downstream 2188946 2842819 ~ 2843139 (+) True G212938
TU243391 other downstream 3151270 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793

Expression Profile