RNA id: CI01000050_00457216_00463632.mRNA



Basic Information


Item Value
RNA id CI01000050_00457216_00463632.mRNA
length 1431
RNA type mRNA
GC content 0.52
exon number 8
gene id CI01000050_00457216_00463632
representative True

Chromosome Information


Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 456930 ~ 463646 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTTAAAACTGGCGTTATTATCCTCCGAAGCACTAGGTGTCGAAAGAACAAAAATGTATATCCAAAACGCCTAATGCCGCTGTCTCTGAGCTTCCGTAGTATTTACACTCACTCATGAATCCTTCATCATCTGAAATTGTTTGTTAAACGCGGTTTAACCCGCGATTTGTGTTTCAGAGCAAAAGCAGTTCCCGCTCTCGAGGGAGTCATGCGTTCAGGACAGCGACGACGCGCCGCAACGTCAAAATAGCCGGAGGATTGACAGTTTTGCATTGTGCGCGTGAGAATGTCGAGATCTGAAGGCAGCGACGCAGAGCTGCAGACAGCCGCGGGCTGGAGGAGAGAGACGAGAGAGAGACAGAGCGGCAAAACAGCTGGGAGACTCGATGTCTACATCATCAGTCCTCAGGGCAAGATCTTCAGGTCCAGGACTCAGCTGCGCAGATATCTGCTCTCACAAACTAACGTGGAGCTGCAGATCAGTGACTTTGACTTCTCAGTGTCTGATAAAACTCAACAAACGAGAGGAACACTGAAAGAGGAATCCAGCTGTCCTCTAAGAGCTGGAGAGACGGCAAATGAAAACATGGAGGAGCGTGGAGAAGAGGAGAGCGAGACCGGAGAGCAGAGCGGCCTGGACACAGAACGAGAGAATCCGTTAAATCCAGCTCTAGATGAACATTCATCCACTTCTGCTTCAGAGAGCCAAGAACACGATCCGTTAGAGACAGCCGGAGGAGTCGAGGGTGAAAACAAGAGCCTGAACCTCACGGAGTGTGTGTCTCCACCCAGAAACACTGAGAGCCGGTCGAAGTTATTTGCAGAGAAGCGGAAAACGAGTCCGTACTTCGGTGGAAGGAGTAACGCATTTGGACACAACGTGTCGCTGGATGGTGTCTGTTTCAACGCTCAGGGTAAAAGGAAGTGGACTCCGCCGCGCTCGCCCTACAACCTGGTGCAGGAGACCCTGTTTCACGACCCCTGGAAGCTTCTGGTGGCCACCATCTTCCTCAACAAGACCAGCGGTGCTCAGCAGGTTTTGAAACAGCTGACACGTGGATGTGATGTGTTCGTCTGTATTTCTGCAGGTAAGATGGCGATCCCGACGCTGTGGGAGTTTTTCGAGCGCTACCCGAGCGCAGACGTGACCCGAGCGAGTGACTGGAGGCCTCTGGCGCTCCTGCTGCAGCCGCTGGGTCTCAGCACACTCCGCGCAAAGACACTCATACGCTTCTCTGACGAGTATCTGAGTAAATCCTGGCGATATCCCATTGAGCTCCACGGCATTGGCAAATACGGCAATGACTCATACCGAATCTTCTGCGTGGAGGAGTGGAGAGAGGTGACACCAGATGACCACAAGCTCAACGACTATCATGCCTGGTTGTGGAGAAACCAGGAGCGCTTAGGAATCTGATTTTACTCATTTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU240706 lncRNA upstream 21418 435237 ~ 435512 (+) True G212185
TU240664 lncRNA upstream 160232 296456 ~ 296698 (+) True G212143
TU240581 lncRNA upstream 173665 283019 ~ 283265 (+) True G212076
TU240662 lncRNA upstream 174182 282487 ~ 282748 (+) True G212141
TU240646 lncRNA upstream 185665 271058 ~ 271265 (+) True G212136
TU240712 lncRNA downstream 2057 465703 ~ 466360 (+) True G212190
TU240710 lncRNA downstream 2948 466594 ~ 467370 (+) True G212188
TU240749 lncRNA downstream 67085 530731 ~ 530950 (+) True G212225
TU240750 lncRNA downstream 67332 530978 ~ 531182 (+) True G212226
TU240754 lncRNA downstream 71202 534848 ~ 535088 (+) True G212230
CI01000050_00449181_00451580.mRNA mRNA upstream 4883 449181 ~ 452047 (+) True CI01000050_00449181_00451580
CI01000050_00376389_00376735.mRNA mRNA upstream 79966 376217 ~ 376964 (+) True CI01000050_00376389_00376735
CI01000050_00302983_00357876.mRNA mRNA upstream 98638 302983 ~ 358292 (+) True CI01000050_00302983_00357876
CI01000050_00274836_00275609.mRNA mRNA upstream 180493 274695 ~ 276437 (+) True CI01000050_00274836_00275609
CI01000050_00235034_00262436.mRNA mRNA upstream 193311 235034 ~ 263619 (+) True CI01000050_00235034_00262436
CI01000050_00615170_00641706.mRNA mRNA downstream 151524 615170 ~ 641774 (+) True CI01000050_00615170_00641706
CI01000050_00648100_00653861.mRNA mRNA downstream 184454 648100 ~ 653873 (+) True CI01000050_00648100_00653861
CI01000050_00678001_00716978.mRNA mRNA downstream 214253 677899 ~ 716978 (+) True CI01000050_00678001_00716978
CI01000050_00718711_00742201.mRNA mRNA downstream 255065 718711 ~ 742201 (+) True CI01000050_00718711_00742201
CI01000050_00753574_00762446.mRNA mRNA downstream 288728 752374 ~ 762767 (+) True CI01000050_00753574_00762446
TU240705 other upstream 22724 433684 ~ 434206 (+) True G212184
TU240505 other upstream 318919 82604 ~ 138011 (+) True G212006
TU240463 other upstream 430518 22484 ~ 26412 (+) True CI01000050_00012155_00026251
TU240937 other downstream 833000 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 1228157 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 2311193 2774839 ~ 2775133 (+) True G212927
TU241503 other downstream 2379173 2842819 ~ 2843139 (+) True G212938
TU243391 other downstream 3341497 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793

Expression Profile