RNA id: TU240664


Basic Information

Item Value
RNA id TU240664
length 243
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G212143
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 296456 ~ 296698 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTAAAGTCCCCGCCAAAGGAAGTAGTCCCTTTTAGCAATTTGTTAGCAACCGCCGTTTTTAAGACGCAATAAAGGTTTAAAAAATCACAAGCGGGTTATTACTGGTGTGTTTCATGTCATAGATCAAAATGTGAAAATATTTAGAGGCTTTGTTAACCACAGACCTTATTTCAGGCGATTTAGCAAATACCCATTCAAAAAACCCATAGACTTCGGGGCGATGGAACCGAAAGTCCTAAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240581 lncRNA upstream 13191 283019 ~ 283265 (+) True G212076
TU240662 lncRNA upstream 13708 282487 ~ 282748 (+) True G212141
TU240646 lncRNA upstream 25191 271058 ~ 271265 (+) True G212136
TU240520 lncRNA upstream 106849 106065 ~ 189607 (+) True G212017
TU240519 lncRNA upstream 157050 106065 ~ 139406 (+) False G212017
TU240706 lncRNA downstream 138539 435237 ~ 435512 (+) True G212185
TU240712 lncRNA downstream 169005 465703 ~ 466360 (+) True G212190
TU240710 lncRNA downstream 169896 466594 ~ 467370 (+) True G212188
TU240749 lncRNA downstream 234033 530731 ~ 530950 (+) True G212225
TU240750 lncRNA downstream 234280 530978 ~ 531182 (+) True G212226
CI01000050_00274836_00275609.mRNA mRNA upstream 20019 274695 ~ 276437 (+) True CI01000050_00274836_00275609
CI01000050_00235034_00262436.mRNA mRNA upstream 32837 235034 ~ 263619 (+) True CI01000050_00235034_00262436
CI01000050_00148346_00149410.mRNA mRNA upstream 146675 148220 ~ 149781 (+) True CI01000050_00148346_00149410
CI01000050_00068652_00068867.mRNA mRNA upstream 227113 68652 ~ 69343 (+) True CI01000050_00068652_00068867
CI01000050_00012155_00026251.mRNA mRNA upstream 270205 12079 ~ 26251 (+) False CI01000050_00012155_00026251
CI01000050_00302983_00357876.mRNA mRNA downstream 6285 302983 ~ 358292 (+) True CI01000050_00302983_00357876
CI01000050_00376389_00376735.mRNA mRNA downstream 79519 376217 ~ 376964 (+) True CI01000050_00376389_00376735
CI01000050_00449181_00451580.mRNA mRNA downstream 152483 449181 ~ 452047 (+) True CI01000050_00449181_00451580
CI01000050_00457216_00463632.mRNA mRNA downstream 160232 456930 ~ 463646 (+) True CI01000050_00457216_00463632
CI01000050_00615170_00641706.mRNA mRNA downstream 318472 615170 ~ 641774 (+) True CI01000050_00615170_00641706
TU240505 other upstream 158445 82604 ~ 138011 (+) True G212006
TU240463 other upstream 270044 22484 ~ 26412 (+) True CI01000050_00012155_00026251
TU240705 other downstream 136986 433684 ~ 434206 (+) True G212184
TU240937 other downstream 999948 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 1395105 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 2478141 2774839 ~ 2775133 (+) True G212927
TU241503 other downstream 2546121 2842819 ~ 2843139 (+) True G212938

Expression Profile