RNA id: CI01000050_00068652_00068867.mRNA


Basic Information

Item Value
RNA id CI01000050_00068652_00068867.mRNA
length 692
RNA type mRNA
GC content 0.35
exon number 1
gene id CI01000050_00068652_00068867
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 68652 ~ 69343 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTATCGGCAGGACTGTGATACATTTGGCATGGTTGTGAAGATGTTGGTGGCCAAGGATCCATCATTGGAGAAGTCAATTCAGCCATCTCTGCGTGAAAACTTGAGGGACATTGGCATGCGTTGCATCAAGGCCATGGAGCAGTTCATCCATGAGTATGATTCTCCAGAGCTAGACACTCCAACATCCACCTCCCAAATGCATTCCATCAAGTGAAGACTGAATGCAGCTACTTATTTACTAATGTCTTACTCACCCTAACCATTCAACTTTATAAGCTAAACCCAATGTGAACCCAGAGTTATGTTTTCTGACTGTATATTGTTTGCAAACTGTAACTAAGATCTGTACCATGTCGAGAAACAAGTTTAAAATATTGGTGGAAGTCAGAGTAAAGAATAATGAATTTAGTTGTACATAAATCATCATGTGAATTGTTAGTTTGGTATTAAGCTAGCTGTAGTGTCTTGAATTTTTTTTTACTTGATAAAAATCTGTCTACATATAAAAATTGTCTTCCAGATAATTAAGATTGTGAAAAAAACAATCACATGAGAGGATTATCAGAAACTATTTTTAAAAAATCACAAAAGAGGTAATTTTCACCCTACGTCAGAATATATTTCAGAAAATACAATATAAAATAGTCTTTTTTATGGATCACCTCAATTGTATTAAGTTCTGAAGTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240471 lncRNA upstream 27041 25140 ~ 41611 (+) True G211975
TU240519 lncRNA downstream 36722 106065 ~ 139406 (+) False G212017
TU240520 lncRNA downstream 36722 106065 ~ 189607 (+) True G212017
TU240646 lncRNA downstream 201715 271058 ~ 271265 (+) True G212136
TU240662 lncRNA downstream 213144 282487 ~ 282748 (+) True G212141
TU240581 lncRNA downstream 213676 283019 ~ 283265 (+) True G212076
CI01000050_00012155_00026251.mRNA mRNA upstream 42401 12079 ~ 26251 (+) False CI01000050_00012155_00026251
CI01000050_00000004_00000459.mRNA mRNA upstream 68047 4 ~ 605 (+) True CI01000050_00000004_00000459
CI01000050_00148346_00149410.mRNA mRNA downstream 78877 148220 ~ 149781 (+) True CI01000050_00148346_00149410
CI01000050_00235034_00262436.mRNA mRNA downstream 165691 235034 ~ 263619 (+) True CI01000050_00235034_00262436
CI01000050_00274836_00275609.mRNA mRNA downstream 205352 274695 ~ 276437 (+) True CI01000050_00274836_00275609
CI01000050_00302983_00357876.mRNA mRNA downstream 233640 302983 ~ 358292 (+) True CI01000050_00302983_00357876
CI01000050_00376389_00376735.mRNA mRNA downstream 306874 376217 ~ 376964 (+) True CI01000050_00376389_00376735
TU240463 other upstream 42240 22484 ~ 26412 (+) True CI01000050_00012155_00026251
TU240505 other downstream 13261 82604 ~ 138011 (+) True G212006
TU240705 other downstream 364341 433684 ~ 434206 (+) True G212184
TU240937 other downstream 1227303 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 1622460 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 2705496 2774839 ~ 2775133 (+) True G212927

Expression Profile