G211975


Basic Information

Item Value
gene id G211975
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 25140 ~ 41611 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU240471
TTCTAAGTGTAAACTTATCTGATTATATAATGGCCACACAGTTTTAGAGGATCATTGTAAATCAGTAACTGTAATCTGTTTACTAGAATTTAGTGTGCTACATTACTTTTCTGTACAAAAATTAGACCACCTTAATTACTTTGTAATTAGATTACACCCAATACTGCATATCAAACAATATTGCCCATAATAAAGTTTTTTTTTTTTTTTTTTTTGTAATTTGTGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU240471 True 227 lncRNA 0.27 2 25140 41611

Neighbor

gene id symbol gene type direction distance location
CI01000050_00000004_00000459 NA coding upstream 24535 4 ~ 605 (+)
CI01000050_00068652_00068867 NA coding downstream 27041 68652 ~ 69343 (+)
CI01000050_00148346_00149410 RHO coding downstream 106609 148220 ~ 149781 (+)
CI01000050_00235034_00262436 NA coding downstream 193423 235034 ~ 263619 (+)
CI01000050_00274836_00275609 NA coding downstream 233084 274695 ~ 276437 (+)
CI01000050_00302983_00357876 CACNA1DB, CACNA1D coding downstream 261372 302983 ~ 358292 (+)
G212017 NA non-coding downstream 64454 106065 ~ 189607 (+)
G212136 NA non-coding downstream 229447 271058 ~ 271265 (+)
G212141 NA non-coding downstream 240876 282487 ~ 282748 (+)
G212076 NA non-coding downstream 241408 283019 ~ 283265 (+)
G212143 NA non-coding downstream 254845 296456 ~ 296698 (+)
G212006 NA other downstream 40993 82604 ~ 138011 (+)
G212184 NA other downstream 392073 433684 ~ 434206 (+)
CI01000050_01296683_01297763 SELENOK other downstream 1255035 1296365 ~ 1298255 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 1650192 1691374 ~ 1698973 (+)
G212927 NA other downstream 2733228 2774839 ~ 2775133 (+)

Expression


Co-expression Network