RNA id: TU240471


Basic Information

Item Value
RNA id TU240471
length 227
lncRNA type sense_over
GC content 0.27
exon number 2
gene id G211975
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 25140 ~ 41611 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTAAGTGTAAACTTATCTGATTATATAATGGCCACACAGTTTTAGAGGATCATTGTAAATCAGTAACTGTAATCTGTTTACTAGAATTTAGTGTGCTACATTACTTTTCTGTACAAAAATTAGACCACCTTAATTACTTTGTAATTAGATTACACCCAATACTGCATATCAAACAATATTGCCCATAATAAAGTTTTTTTTTTTTTTTTTTTTGTAATTTGTGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240519 lncRNA downstream 64454 106065 ~ 139406 (+) False G212017
TU240520 lncRNA downstream 64454 106065 ~ 189607 (+) True G212017
TU240646 lncRNA downstream 229447 271058 ~ 271265 (+) True G212136
TU240662 lncRNA downstream 240876 282487 ~ 282748 (+) True G212141
TU240581 lncRNA downstream 241408 283019 ~ 283265 (+) True G212076
CI01000050_00000004_00000459.mRNA mRNA upstream 24535 4 ~ 605 (+) True CI01000050_00000004_00000459
CI01000050_00068652_00068867.mRNA mRNA downstream 27041 68652 ~ 69343 (+) True CI01000050_00068652_00068867
CI01000050_00148346_00149410.mRNA mRNA downstream 106609 148220 ~ 149781 (+) True CI01000050_00148346_00149410
CI01000050_00235034_00262436.mRNA mRNA downstream 193423 235034 ~ 263619 (+) True CI01000050_00235034_00262436
CI01000050_00274836_00275609.mRNA mRNA downstream 233084 274695 ~ 276437 (+) True CI01000050_00274836_00275609
CI01000050_00302983_00357876.mRNA mRNA downstream 261372 302983 ~ 358292 (+) True CI01000050_00302983_00357876
TU240505 other downstream 40993 82604 ~ 138011 (+) True G212006
TU240705 other downstream 392073 433684 ~ 434206 (+) True G212184
TU240937 other downstream 1255035 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 1650192 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 2733228 2774839 ~ 2775133 (+) True G212927

Expression Profile