RNA id: TU240520



Basic Information


Item Value
RNA id TU240520
length 238
lncRNA type read_through
GC content 0.45
exon number 2
gene id G212017
representative True

Chromosome Information


Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 106065 ~ 189607 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCCATCCAGCATTTAATATGATATTCTAAAATCGATCTATCTTACTGCAGTGTGCAACAGTGTCTCACAGCAGCCGCCGAGCGAACGCACAGAGTAACGTTATAACATCATTTTCAACACACTCAAATGTATCTAATATGATAAACAGAGCTGAGTTACCTCATACTCATGACCAGAAAAGCGGAAGCGGCGCCGGCGACTGTGTCATAATAAAAGTCTCGCTGCTCGTGAGGCGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU240471 lncRNA upstream 64454 25140 ~ 41611 (+) True G211975
TU240646 lncRNA downstream 81451 271058 ~ 271265 (+) True G212136
TU240662 lncRNA downstream 92880 282487 ~ 282748 (+) True G212141
TU240581 lncRNA downstream 93412 283019 ~ 283265 (+) True G212076
TU240664 lncRNA downstream 106849 296456 ~ 296698 (+) True G212143
TU240706 lncRNA downstream 245630 435237 ~ 435512 (+) True G212185
CI01000050_00068652_00068867.mRNA mRNA upstream 36722 68652 ~ 69343 (+) True CI01000050_00068652_00068867
CI01000050_00012155_00026251.mRNA mRNA upstream 79814 12079 ~ 26251 (+) False CI01000050_00012155_00026251
CI01000050_00000004_00000459.mRNA mRNA upstream 105460 4 ~ 605 (+) True CI01000050_00000004_00000459
CI01000050_00235034_00262436.mRNA mRNA downstream 45427 235034 ~ 263619 (+) True CI01000050_00235034_00262436
CI01000050_00274836_00275609.mRNA mRNA downstream 85088 274695 ~ 276437 (+) True CI01000050_00274836_00275609
CI01000050_00302983_00357876.mRNA mRNA downstream 113376 302983 ~ 358292 (+) True CI01000050_00302983_00357876
CI01000050_00376389_00376735.mRNA mRNA downstream 186610 376217 ~ 376964 (+) True CI01000050_00376389_00376735
CI01000050_00449181_00451580.mRNA mRNA downstream 259574 449181 ~ 452047 (+) True CI01000050_00449181_00451580
TU240463 other upstream 79653 22484 ~ 26412 (+) True CI01000050_00012155_00026251
TU240705 other downstream 244077 433684 ~ 434206 (+) True G212184
TU240937 other downstream 1107039 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 1502196 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 2585232 2774839 ~ 2775133 (+) True G212927
TU241503 other downstream 2653212 2842819 ~ 2843139 (+) True G212938

Expression Profile