RNA id: CI01000050_00376389_00376735.mRNA



Basic Information


Item Value
RNA id CI01000050_00376389_00376735.mRNA
length 689
RNA type mRNA
GC content 0.44
exon number 2
gene id CI01000050_00376389_00376735
representative True

Chromosome Information


Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 376217 ~ 376964 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCATAAAATCGATCAACTGCAGTTTGCTTAAATACAGGCAAACTTCATATTCACATTTCAATTGTAATATTCGGATTTTGCAAAGTGTAGGAGCTTTCTGAAAACACACACTGAACTCACGGTGTTGGTTGGGGAGGTGGATGGTGAGGAGTCTGGAGTTATCAGGTTGAGAATGACGTCCATTGGAGAAATCATTGAGCCAGCAGGCGTTCACAGCTCCGTTAGACAAGGCTTCGCTCGGGTCCAGAGCTTAGATTTGAGCGTCAGGAGTATCTGTGCTGTTCCATTACAACATGCAGAGACGCTCAAACAAGCGCAAATGATGTCGCTTACTGAAGAGACGTTCTTAAAACTGAGCGGAAATGGAAACACTGCGTTTGAAAAAGCAAGTGTTCTAAATTCATGCAGAGAATCTTGCAGAATGAAAAACCCAAAAGCTCAGCGTGAAGGTTTAGTGTGAGAGAGAGAAGCAGAGCGAGCCAGAACCCATGAGAAGGGTTTTGTCTCGGCGGGACTCTTTTGGCCAACAAAACAGTGTTGGACAACTAATGAGCAAATTCATTCACGGCTTTCAAGAGCTTAGCCAATGAGTTATGTTGACCTACCAACCTCAACCAATCACAGACAAAGATCATAACCATCCACTGTGTCCAGACTAATGACTGGCTTTGCTTTCAATTACAAACGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU240664 lncRNA upstream 79519 296456 ~ 296698 (+) True G212143
TU240581 lncRNA upstream 92952 283019 ~ 283265 (+) True G212076
TU240662 lncRNA upstream 93469 282487 ~ 282748 (+) True G212141
TU240646 lncRNA upstream 104952 271058 ~ 271265 (+) True G212136
TU240520 lncRNA upstream 186610 106065 ~ 189607 (+) True G212017
TU240706 lncRNA downstream 58273 435237 ~ 435512 (+) True G212185
TU240712 lncRNA downstream 88739 465703 ~ 466360 (+) True G212190
TU240710 lncRNA downstream 89630 466594 ~ 467370 (+) True G212188
TU240749 lncRNA downstream 153767 530731 ~ 530950 (+) True G212225
TU240750 lncRNA downstream 154014 530978 ~ 531182 (+) True G212226
CI01000050_00302983_00357876.mRNA mRNA upstream 17925 302983 ~ 358292 (+) True CI01000050_00302983_00357876
CI01000050_00274836_00275609.mRNA mRNA upstream 99780 274695 ~ 276437 (+) True CI01000050_00274836_00275609
CI01000050_00235034_00262436.mRNA mRNA upstream 112598 235034 ~ 263619 (+) True CI01000050_00235034_00262436
CI01000050_00148346_00149410.mRNA mRNA upstream 226436 148220 ~ 149781 (+) True CI01000050_00148346_00149410
CI01000050_00068652_00068867.mRNA mRNA upstream 306874 68652 ~ 69343 (+) True CI01000050_00068652_00068867
CI01000050_00449181_00451580.mRNA mRNA downstream 72217 449181 ~ 452047 (+) True CI01000050_00449181_00451580
CI01000050_00457216_00463632.mRNA mRNA downstream 79966 456930 ~ 463646 (+) True CI01000050_00457216_00463632
CI01000050_00615170_00641706.mRNA mRNA downstream 238206 615170 ~ 641774 (+) True CI01000050_00615170_00641706
CI01000050_00648100_00653861.mRNA mRNA downstream 271136 648100 ~ 653873 (+) True CI01000050_00648100_00653861
CI01000050_00678001_00716978.mRNA mRNA downstream 300935 677899 ~ 716978 (+) True CI01000050_00678001_00716978
TU240505 other upstream 238206 82604 ~ 138011 (+) True G212006
TU240463 other upstream 349805 22484 ~ 26412 (+) True CI01000050_00012155_00026251
TU240705 other downstream 56720 433684 ~ 434206 (+) True G212184
TU240937 other downstream 919682 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 1314839 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 2397875 2774839 ~ 2775133 (+) True G212927
TU241503 other downstream 2465855 2842819 ~ 2843139 (+) True G212938

Expression Profile