RNA id: CI01000050_00148346_00149410.mRNA


Basic Information

Item Value
RNA id CI01000050_00148346_00149410.mRNA
length 1562
RNA type mRNA
GC content 0.54
exon number 1
gene id CI01000050_00148346_00149410
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 148220 ~ 149781 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAAGCGGGGTGCATGAACGCCCCATCAAGTTGTAGCACGGTCCTGCCTCGTTTCTCTACATTCCTGCCAAGCCATCCAAAGACTACCGCAGAAGGGGCTGACCACAACACTCAACCGCAGCCATGAACGGTACAGAGGGACCGGCATTCTACGTGCCTATGTCCAATGAGACTGGCGTTGTTAGGAGCCCGTACGATTATCCCCAGTACTACCTGGTGGCACCATGGGCGTTTGGTTGCCTGGCCGCTTACATGTTCTTCCTCATTCTCACCGGCTTCCCCATCAATTTCCTCACTCTGTATGTCACCCTCGAGCACAAGAAGCTGCGTACACCCCTCAACTACAGTCTGCTGAACCTCGCCGTTGCCGATCTCTTCATGGTGTTCGGTGGCTTCACCACAACGATGTACACCTCGTTGCATGGCTACTTCGTGTTCGGACGCCTCGGGTGCAACCTCGAAGGCTTCTTCGCGACACTGGGTGGTGAAATGGCGCTCTGGTCCATTGTCACACTGGCCATTGAGAGGTGGCTCGTCGTCTGTAAGCCCATCAGCAACTTCCGCTTCGGAGAGAACCACGCCATCATCGGCGTCATCTTCACATGGGTCATGGCCTGCTCCTGCGCCGTGCCTCCCCTGCTCGGCTGGTCCCGTTACATCCCCGAGGGCATGCAGTGCTCGTGCGGAGTCGACTACTACACTCGTGCCGAGGGCTACAACAACGAGTCCTTCGTCATCTACATGTTCACTGTCCACGCCTGCATTCCCTTCTGTGTCATCTTCTTCTGCTACGGTCGTCTCGTCTGCGCCGTCAAAGATGCCGCTGCCCAGCAGCAGGAGTCCGAGACCACGCAGAGGGCTGAGCGTGAGGTCACCCGCATGGTCATCCTCATGGGCTTCGCCTACTTGGTTTGTTGGCTCCCCTATGCCAGTACGGCCTGGTACATCTTCACCCACAAGGGAGCCAATTTTGGGCCTGTCCTCATGACAGTACCAGCCTTCTTTGCCAAGACCTCTGCTGTCTACAACCCGGTCATCTACATCTGCATGAACAAGCAGTTCCGTCACTGCATGATCACCACCCTGTGCTGCGGCAAGAACCCCTTCGAGGATGAAGAGGGCGCCTCCACTACTGCGTCCAAGACCGAGGCTTCGTCCGTGTCTTCCAGCTCCGTGTCCCCGGCGTAAACATGAGCACACGACACACTCTAAGCAGCGACGTGCACTGGGCTTCGACGGCAACCGACACAGAGACCACGAAGTGTTCAGCCCAGGGAAACGAGCGACCGCTACCACTTGCAGAAAAAATTGTCTGTCAGTTTTCCTTTTTGTATTTTTACAAAACCCAATTGGTTCAACCAAAAGACAGTTTTGAGAGAGGACAGACCATGTCCCAGTTTCAGTACATCCAGCGAGTCCAGCGTAATGGTGCATAAGATTCTTTTTATTTTTCTTCCTAAAATGCTGCAAAAGGAAAAATATCTTAACTCTCTTACTGTTGGACTCCTTATACTGGCTTTGTTGTGATTGTAGAGGCATGTATTCAAGGCAACGTAACA

Function

GO:

id name namespace
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
K04250 RHO, OPN2; rhodopsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240519 lncRNA upstream 8814 106065 ~ 139406 (+) False G212017
TU240471 lncRNA upstream 106609 25140 ~ 41611 (+) True G211975
TU240646 lncRNA downstream 121277 271058 ~ 271265 (+) True G212136
TU240662 lncRNA downstream 132706 282487 ~ 282748 (+) True G212141
TU240581 lncRNA downstream 133238 283019 ~ 283265 (+) True G212076
TU240664 lncRNA downstream 146675 296456 ~ 296698 (+) True G212143
TU240706 lncRNA downstream 285456 435237 ~ 435512 (+) True G212185
CI01000050_00068652_00068867.mRNA mRNA upstream 78877 68652 ~ 69343 (+) True CI01000050_00068652_00068867
CI01000050_00012155_00026251.mRNA mRNA upstream 121969 12079 ~ 26251 (+) False CI01000050_00012155_00026251
CI01000050_00000004_00000459.mRNA mRNA upstream 147615 4 ~ 605 (+) True CI01000050_00000004_00000459
CI01000050_00235034_00262436.mRNA mRNA downstream 85253 235034 ~ 263619 (+) True CI01000050_00235034_00262436
CI01000050_00274836_00275609.mRNA mRNA downstream 124914 274695 ~ 276437 (+) True CI01000050_00274836_00275609
CI01000050_00302983_00357876.mRNA mRNA downstream 153202 302983 ~ 358292 (+) True CI01000050_00302983_00357876
CI01000050_00376389_00376735.mRNA mRNA downstream 226436 376217 ~ 376964 (+) True CI01000050_00376389_00376735
CI01000050_00449181_00451580.mRNA mRNA downstream 299400 449181 ~ 452047 (+) True CI01000050_00449181_00451580
TU240505 other upstream 10209 82604 ~ 138011 (+) True G212006
TU240463 other upstream 121808 22484 ~ 26412 (+) True CI01000050_00012155_00026251
TU240705 other downstream 283903 433684 ~ 434206 (+) True G212184
TU240937 other downstream 1146865 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 1542022 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 2625058 2774839 ~ 2775133 (+) True G212927
TU241503 other downstream 2693038 2842819 ~ 2843139 (+) True G212938

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071886 True 1546 mRNA 0.57 1 NC_007119.7 54076195 ~ 54077740 (-)