RNA id: TU240818


Basic Information

Item Value
RNA id TU240818
length 325
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G212293
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 826804 ~ 827128 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATTGTGGGAAATGGAGTCCATATAACAAAATTGATGAACACAGACCTAGGGCACATGTTACACTGCAGACTGGGAACACCCCACAAGAGCTGCAGTTTTGGAGACGCTCTGACCCAGTCGTCTAGCCATTACAATTTGGTCCTTGTCAAACTCGCTCAAATCCTTACGCTTGCCCATTTTTCCTGCTTCTAACACATCAACTTTGAGGACAAAATGTTCACTTGCTGCCTAATATATCCACCCACTAACAGGTGCCGTGATGAAGAGATAATCAGTGTTATTCACTTCACCTGTCAGTGCTCATAATGTCATGCCTGATCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240614 lncRNA upstream 62369 763998 ~ 764435 (+) True G212104
TU240794 lncRNA upstream 80226 745947 ~ 746578 (+) True G212269
TU240786 lncRNA upstream 162655 663684 ~ 664149 (+) True G212261
TU240785 lncRNA upstream 164356 661614 ~ 662448 (+) True G212260
TU240623 lncRNA upstream 167591 658564 ~ 659213 (+) True G212113
TU240819 lncRNA downstream 690 827818 ~ 828085 (+) True G212294
TU240821 lncRNA downstream 82685 909813 ~ 910029 (+) True G212296
TU240899 lncRNA downstream 345006 1172134 ~ 1176043 (+) True G212366
TU240910 lncRNA downstream 368897 1196025 ~ 1201801 (+) True G212376
TU240884 lncRNA downstream 405964 1233092 ~ 1233734 (+) False G212357
CI01000050_00818849_00822703.mRNA mRNA upstream 3665 818849 ~ 823139 (+) True CI01000050_00818849_00822703
CI01000050_00770066_00782851.mRNA mRNA upstream 43832 770066 ~ 782972 (+) True CI01000050_00770066_00782851
CI01000050_00753574_00762446.mRNA mRNA upstream 64037 752374 ~ 762767 (+) True CI01000050_00753574_00762446
CI01000050_00718711_00742201.mRNA mRNA upstream 84603 718711 ~ 742201 (+) True CI01000050_00718711_00742201
CI01000050_00678001_00716978.mRNA mRNA upstream 109826 677899 ~ 716978 (+) True CI01000050_00678001_00716978
CI01000050_00851621_00899726.mRNA mRNA downstream 24398 851526 ~ 901164 (+) True CI01000050_00851621_00899726
CI01000050_00916485_00921744.mRNA mRNA downstream 89357 916485 ~ 921744 (+) True CI01000050_00916485_00921744
CI01000050_00931338_00939002.mRNA mRNA downstream 104210 931338 ~ 939002 (+) True CI01000050_00931338_00939002
CI01000050_00967544_00997883.mRNA mRNA downstream 140416 967544 ~ 997883 (+) True CI01000050_00967544_00997883
CI01000050_01002924_01005496.mRNA mRNA downstream 175796 1002924 ~ 1005514 (+) True CI01000050_01002924_01005496
TU240705 other upstream 392598 433684 ~ 434206 (+) True G212184
TU240505 other upstream 688793 82604 ~ 138011 (+) True G212006
TU240463 other upstream 800392 22484 ~ 26412 (+) True CI01000050_00012155_00026251
TU240937 other downstream 469518 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 864675 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 1947711 2774839 ~ 2775133 (+) True G212927
TU241503 other downstream 2015691 2842819 ~ 2843139 (+) True G212938
TU243391 other downstream 2978015 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793

Expression Profile