RNA id: TU240821


Basic Information

Item Value
RNA id TU240821
length 217
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G212296
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 909813 ~ 910029 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATTATTAGGCTATTAATTAACAGTTAATCAAGTGTAAGAAATTATGTTCAGTTGGTTTTATTATGCACTAATTTGTTTTCTTACGCATTATATAGTAAGCTATGCGTTTTTTAAAATATAAAAAACGAAATATAATTCGTATATACTTAGGATAATAATTAACTTGACAGTTTGGGGAGACCCGATTTGTCATGACACCGTTAGGTTTAAAGGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240819 lncRNA upstream 81728 827818 ~ 828085 (+) True G212294
TU240818 lncRNA upstream 82685 826804 ~ 827128 (+) True G212293
TU240614 lncRNA upstream 145378 763998 ~ 764435 (+) True G212104
TU240794 lncRNA upstream 163235 745947 ~ 746578 (+) True G212269
TU240786 lncRNA upstream 245664 663684 ~ 664149 (+) True G212261
TU240899 lncRNA downstream 262105 1172134 ~ 1176043 (+) True G212366
TU240910 lncRNA downstream 285996 1196025 ~ 1201801 (+) True G212376
TU240884 lncRNA downstream 323063 1233092 ~ 1233734 (+) False G212357
TU240885 lncRNA downstream 323063 1233092 ~ 1233693 (+) True G212357
TU241000 lncRNA downstream 422338 1332367 ~ 1336316 (+) True G212466
CI01000050_00851621_00899726.mRNA mRNA upstream 8649 851526 ~ 901164 (+) True CI01000050_00851621_00899726
CI01000050_00818849_00822703.mRNA mRNA upstream 86674 818849 ~ 823139 (+) True CI01000050_00818849_00822703
CI01000050_00770066_00782851.mRNA mRNA upstream 126841 770066 ~ 782972 (+) True CI01000050_00770066_00782851
CI01000050_00753574_00762446.mRNA mRNA upstream 147046 752374 ~ 762767 (+) True CI01000050_00753574_00762446
CI01000050_00718711_00742201.mRNA mRNA upstream 167612 718711 ~ 742201 (+) True CI01000050_00718711_00742201
CI01000050_00916485_00921744.mRNA mRNA downstream 6456 916485 ~ 921744 (+) True CI01000050_00916485_00921744
CI01000050_00931338_00939002.mRNA mRNA downstream 21309 931338 ~ 939002 (+) True CI01000050_00931338_00939002
CI01000050_00967544_00997883.mRNA mRNA downstream 57515 967544 ~ 997883 (+) True CI01000050_00967544_00997883
CI01000050_01002924_01005496.mRNA mRNA downstream 92895 1002924 ~ 1005514 (+) True CI01000050_01002924_01005496
CI01000050_01023375_01033682.mRNA mRNA downstream 113346 1023375 ~ 1034169 (+) True CI01000050_01023375_01033682
TU240705 other upstream 475607 433684 ~ 434206 (+) True G212184
TU240505 other upstream 771802 82604 ~ 138011 (+) True G212006
TU240463 other upstream 883401 22484 ~ 26412 (+) True CI01000050_00012155_00026251
TU240937 other downstream 386617 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 781774 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 1864810 2774839 ~ 2775133 (+) True G212927
TU241503 other downstream 1932790 2842819 ~ 2843139 (+) True G212938
TU243391 other downstream 2895114 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793

Expression Profile