AMCG00002248 (ubiad1)


Basic Information

Item Value
gene id AMCG00002248
gene name ubiad1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9018607 ~ 9022271 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002248
GAGGGTGGGACAAGATGGCGGCTCCCAGGTGGTCATTTTGGACTACATGTCCTCGGACCTGACACGTAATCGGAATAAGATTGAACAACAGCTAACGGTTAGAATAGAGAGATTAATGATGTGGTTGCTAGTCAGTATAACAGTGTTAACCAAGACAACAAGAAGAGGTGGAGCAATGGCAGAGGGGGATAAACCCAGCGTCGAATTGGAGACTTTAATCCCAGAGGGACTGAATGGGCAGAGCGCTGCTAGAGGGGAACCAAGAACGAGCGATTTGGACTGGAACCAACTGGAGGGGAATGCTGGCGGGGAGGGCAAATTGAAGCAGAAATGTGCCGCCTATGTCCTGGCCCTGAGGCCGTGGAGTTTCAGCGCCTCTCTGACCCCGGTGGCTCTGGGCAGCGTGCTGGCGTATAAGTCAGAGGGCACCATCGACTTTGTCATACTGGTGGTGTGTGCTGTGGCCGTGCTGTTGGTGCACGGGGCCGGGAACCTTGTGAACACTTACTATGACTTCTccaagggcatcgaccacaagAAAAGCGATGACCGGACTCTGGTTGACCAAATTCTGAAGCCCCAGGATGTAGTTATGTTCGGGGCTGTTCTTTACTCCTTGGGATGCTTGTGTGCAACCTGCCTGTATTTCCTCTCCACCCTGAAGCTGGAGCACCTGGCCCTGATTTATTTTGGAGGCCTGTCAAgaaTCGGTCTGAAATATGTTGCCCTCGGCGATGTGGTTATCTTGATCACCTTCGGCCCTCTGGCGGTGATGTTCGCCCATGCGGTTCAGGTGGGTTACCTGTCCATCGTGCCGCTCCTCTATGCCATTCCCTTGGCACTCAACACGGAAGCCAtcctgcacagcaacaacacgCGTGACATGGATTCGGACAAACAGGCTGGTATTGTCACCCTGGCCATTCTCATTGGACCCACGCTGTCTTATATACTGTTCAACCTGCTCCTGTTTGTCCCCTACATCATGTTCTCCATCATGGCCACCCGCTACACCATCAGCATGGCACTGCCCCTACTGAGCCTGCCGATCGCCTTCCCCCTGGAGAAGCAGTTCAGGAGCCAGTACTACTCCAAGATCCCTCAGAAGACCGCCAAGCTCAACCTGTTAATGGGGCTTTTCTATGTCTTCGGTATTATATTAGCACCACCGGGCACCCTGCCAAAACTCTAATCCTGCCAGTTGTACTAACTACAATTTTATGtggatttttatatttgtggagactttcatacatttctggggctttcatttcatttatttatttatttttgtatttagtaaaaGATTTTGCAGCTTTTAGTAATGGAAATGATTgtgcccttttttttttgtgggcaCTGAAGGTCACAGAATGAATCCCTTTAGCTGTTGTACAGTACAGAAGTTGCATTTCTTGGGCTTGATTAaatactgcaaaaacaaaagtgggGTATAGCAAAATAGTTTAGTCCCATATTTAgcatttagttaaattaaaacgCATCACACAGCTAATGGCTCAGACATGAGTAAGTGTTACTCATCTTaagattacaaaaatattgatACTGATAAGTATACATCGATTCAAATGGGAATACATTGTTTGAATTTTGAAGCAGAAGAAGCCATAGATCACATGACGTAGTGTTTTTGTCATCACAGCTTGAATGGAAGTGATTGAGCCAGTAAATGTCTTTCCcatgtgtgcgcgtgtgtgtatatacacacacacacacacacacacacacacatttagaatatttgttttactaaaaTGTAAATCGTGAAGACAGCGTTCATTGGATATTTTTATATGAgcacttaaaattaaaatggggttctcctttctgttttttatttattctgtgatttAGATGTCCACTTGAAGAATATTGCCATATAGTGCCTATTCATAATAGAAGCACAGAAAACTGATTTGTGTATCTTCTCATGCTGGACTTACTCTATGCACTTTGTGTCCTAATTCCCAGGAGTTCCAGggaatggattttgttttccactcGTACATTAACTCACCATTTAATCAATCATTTTGTCTGGAATGCCAAAGAGCATTCTGTACTATTGTTGGTACAACAGAAGAGCTGGACTTTCATGTAAAAAGTGTGTAGGTGAACACTTTTATCATGATCTGATCTTCATGCCTGTTATTAAACCAAAAGAAAACTGCACCTTCAGTATCTGTTGGATTATTTTATActccatttgtttttggttcGTTTCTGCTGTAGAAGATCACCTCCATGTTCGATGTTGCGAAAGAGGTTCTGAACAGACAGTTTGTTATATTCCTGCATCAAAATGTCTGATAGCCAAGAGATgttacgcacacacacacacacacacacacacgtacacagtGCTGGAATGAAGAGGTAATAGAGGGAAACTCCATTCCTGTTGTTAACTGAAAGAAGACCGCAAATCCCCTTTCACACGGGTGAATCGAAGGAGGTTGTGGACAATCATATGGCTTCATCCAAACGTACAAggattattagtttaatttggATTAGTAATGTAATTatcatttgcaaaataaatatttaaaattaaatgttag

Function

symbol description
ubiad1 Enables antioxidant activity; nitric-oxide synthase activity; and prenyltransferase activity. Involved in endothelial cell development; menaquinone biosynthetic process; and vitamin K biosynthetic process. Acts upstream of or within cellular response to fluid shear stress; circulatory system development; and ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate. Located in Golgi apparatus. Is integral component of Golgi membrane. Is expressed in head; heart; and heart tube. Human ortholog(s) of this gene implicated in Schnyder corneal dystrophy. Orthologous to human UBIAD1 (UbiA prenyltransferase domain containing 1).

NR:

description
PREDICTED: ubiA prenyltransferase domain-containing protein 1

GO: NA

KEGG:

id description
K00810 UBIAD1; menadiol prenyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002248 True 2588 mRNA 0.43 3 9018607 9022271

Neighbor

gene id symbol gene type direction distance location
AMCG00002252 mib2 coding downstream 12720 8995702 ~ 9005887 (-)
AMCG00002251 mib2 coding downstream 36463 8957110 ~ 8982144 (-)
AMCG00002249 mmp23b,LOC106572002 coding downstream 72420 8933969 ~ 8946187 (-)
AMCG00002247 NA coding downstream 115019 8898625 ~ 8903588 (-)
AMCG00002240 calml6 coding downstream 205016 8810319 ~ 8813591 (-)
AMCG00002250 NA coding upstream 33043 9055314 ~ 9061095 (-)
AMCG00002260 NA coding upstream 170928 9193199 ~ 9193429 (-)
AMCG00002259 NA coding upstream 178315 9200586 ~ 9208699 (-)
AMCG00002263 NA coding upstream 287145 9309416 ~ 9356970 (-)
AMCG00002271 NA coding upstream 606379 9628650 ~ 9629679 (-)
G121935 NA non-coding downstream 280 9018126 ~ 9018327 (-)
G121912 NA non-coding downstream 85444 8932163 ~ 8933163 (-)
G121885 NA non-coding downstream 147909 8868645 ~ 8870698 (-)
G121875 NA non-coding downstream 159604 8825431 ~ 8859003 (-)
G121789 NA non-coding downstream 1001532 8016064 ~ 8017075 (-)
G122019 NA non-coding upstream 116176 9138447 ~ 9213429 (-)
G122037 NA non-coding upstream 261698 9283969 ~ 9287587 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding upstream 598757 9621028 ~ 9621472 (-)
G122131 NA non-coding upstream 825964 9848235 ~ 9851376 (-)
G122226 NA non-coding upstream 1200942 10223213 ~ 10224982 (-)
AMCG00002223 NA other downstream 1179196 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 3003214 5975725 ~ 6015393 (-)
G120993 NA other downstream 4798730 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 5232063 3784236 ~ 3786544 (-)
G120907 NA other downstream 5302355 3713867 ~ 3716252 (-)
AMCG00002265 NA other upstream 586479 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 735154 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 808248 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 814647 9836918 ~ 9853075 (-)
AMCG00002288 NA other upstream 1247618 10269889 ~ 10279984 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036826 ubiad1 coding NC_007119.7 CM002892.2 53918234 ~ 53926228 (-)
grasscarp (Ctenopharyngodon idella) CI01000050_00818849_00822703 UBIAD1 coding CI01000050 null 818849 ~ 823139 (+)