G122226


Basic Information

Item Value
gene id G122226
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10223213 ~ 10224982 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU153259
AACGTCAGGATACAGTATATACAATCCACGCAGTAGGATATCAACACAGATCCCCTCTTAAAACTGCACTAAAACACTAcagtactacactacactacaatatATAACACTGATAATTCCTTCTATAGTTGATCATACAGTGGAAACGGCCCCTGAGACAAAGCAAGACATTTTATAGCCtctttattttgcaaatacaagcccagaaggaaaagacaaaagtaaagacagacagaaagtgTCCAACGGGAATAAAAAATTATTGCGGGGCTAAACCATGTCATAGGGGATAAATCGTGTCAGTGGGGTTTGTCATCGTGTGTGAATGTTCCAGCTTCCACTTTACTAATGGGCACTTTCAAGAGCACCTTGCCTGAATGCGTAGGGTGAGGACAGGGCATTGTGTTACTGTCGCTTTCCTGTCTTGTTAGTTGTGCTGTAGTCTGTTGCAATAGGTCAGTGCTGTAGCAGAAGATGGAGTAGTGGGTAAGCATTACTTTGTAGAGAAGTGTTACTTTATATACAGAGGTACTGTGTATGGCTGTTGTGCCcttatattttaaagacattggCGATCATTCCCTGTTTTGTTGCAGTTTGACATCGGTTGAAACTGTGCTGGTTGTGATATAGAGAAAATGGGGACAAGGAATAGAGTTAACACCATAAAGACTCTAACCAGGACTACACCAACCCAGTGCAATAATTCACAGAGTAAAATTCACCGGATGCATTTAATTGTTCAGTGAAGGTAGAACcgaacagaaaactgaaaaatacattctgatcCTGATCCTGTAATGTACTGCAATTGCAACAGTTTTGTGTTACAGTTTTCAACGCGAAGAAAAGGCTCTTCAGGTTCTGTAATTGACAGAGACCGTCAAAAAGAATTTGCATCTGGCTGGCGGGTGTTCCAAATTATCCTGTTTCATTACACATTTGCCTTTTAAAGTTCAGCTTTACCGTCAATTACAATAATTGTTAAGTGACTTGACATTTCTAAAGCCAGCAGACCATCTGTGGTGCAGAACACGCCAAGTATGACTTATTTCCAATTCCTTCTGTTTACATCCTCTTCCCACCAGCAGTCCTCTTTTGAGATTACCTTCTTCTAAGTTCAAGACTTCCATTGGCCCCTAATAAGAAAAAAGTAGCAGTCAGTAAGAATTGTAAGTACAATTTAACAGAGAAATCGCAGTGTTGGTATGACTTGTTTCTCAGTGTTTTTCCCTCTTCATTTTGGTTGGGTTCATTTTCTCCACAGTCGTTGTTATTGTTCTCCATGCTGTAGCTCTGtaactgggggaaaaaatgtcaGGACCTgcatatatcatcatcatcttcattaGCCTGTATTGATCCCCAAgctgtttccacttgcttcgatccaTAGCTTTTTCTTGCAACGTTTATGATTCCATCTTCCGATGtattatgtggtcttcttctaggtcttttttcatctcttggtatccattaaatagcttcctttgttcatATTTGTTCACGGGGTGTCTATCCCATTGCccttttaacattttcctttgttcttggattcattcttttttttatctcttgttcttccaagcatacatctctccatgcttctctgtgtctcttccgcagtttctgtaacatatttgcatttagtgaccaggtttctgagctataagtgagcactggtagtttGCATTGGATTGAATACTttttcttcaggcaaatgggtagactTCCTTTcaagtgtgttttaaatgtagtcTATCCCAT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153259 True 1770 lncRNA 0.39 1 10223213 10224982

Neighbor

gene id symbol gene type direction distance location
AMCG00002282 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC107591103,LOC107737563,LOC103042472 coding downstream 25669 10189763 ~ 10197544 (-)
AMCG00002283 slc25a33,LOC107708828 coding downstream 130110 10079157 ~ 10093103 (-)
AMCG00002285 NA coding downstream 146547 10066912 ~ 10076666 (-)
AMCG00002286 NA coding downstream 192807 10024419 ~ 10030406 (-)
AMCG00002280 NA coding downstream 216642 9977776 ~ 10006571 (-)
AMCG00002281 NA coding upstream 306 10225288 ~ 10239533 (-)
AMCG00002284 NA coding upstream 15110 10240092 ~ 10244785 (-)
AMCG00002292 NA coding upstream 166744 10391726 ~ 10403880 (-)
AMCG00002302 NA coding upstream 530850 10755832 ~ 10789955 (-)
AMCG00002303 NA coding upstream 701886 10926868 ~ 10929003 (-)
G122131 NA non-coding downstream 371837 9848235 ~ 9851376 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 601741 9621028 ~ 9621472 (-)
G122037 NA non-coding downstream 935626 9283969 ~ 9287587 (-)
G122019 NA non-coding downstream 1009784 9138447 ~ 9213429 (-)
G121935 NA non-coding downstream 1204886 9018126 ~ 9018327 (-)
G122302 NA non-coding upstream 525429 10750411 ~ 10750781 (-)
G122319 NA non-coding upstream 587204 10812186 ~ 10813876 (-)
G122376 NA non-coding upstream 1042582 11267564 ~ 11274527 (-)
G122432 NA non-coding upstream 1182542 11407524 ~ 11409586 (-)
G122438 NA non-coding upstream 1224584 11449566 ~ 11449791 (-)
AMCG00002279 NA other downstream 370138 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 389989 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 422105 9757425 ~ 9801108 (-)
AMCG00002265 NA other downstream 603086 9608750 ~ 9620127 (-)
AMCG00002223 NA other downstream 2383802 7826641 ~ 7839411 (-)
AMCG00002288 NA other upstream 44907 10269889 ~ 10279984 (-)
AMCG00002301 NA other upstream 612822 10837804 ~ 10847201 (-)
AMCG00002317 plekhm2 other upstream 1289018 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 1422929 11647911 ~ 11685089 (-)
G122597 NA other upstream 1506635 11731617 ~ 11734324 (-)

Expression


Co-expression Network