AMCG00002303


Basic Information

Item Value
gene id AMCG00002303
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10926868 ~ 10929003 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002303
AGAGCGGAGACACACGCCCGGGCGCAGCACAGAGCAGCGGCCGCTCACTGGGACCCGCACTCGACAGAGGATCTGAGCCAGAACTTTTTCCCTGCTGTTGCTGAACAGTGCGAGAACTTTGGGGATACCCTGATTTCTAGGTAACTAGAGTCTTTTGCAAAGAAAAggatctatatattttttaacaaatctaACTGAAGGGACATTTGGACCAGAATGCCTGCTGACACTATGGAGAAATCTACGGCTTCCCCGGTAGCGGGTATCCCGGCCAGTGGAGCTCACACTCCGGACAAGCCAAAGAATGCTAGTGAGCACAGAAAGTCTTCCAAGCCCATCATGGAGAAACGCCGCAGAGCCAGGATTAACGAGAGCCTGGGCCAGCTCAAAACGCTCATCTTGGATGCACTCAAAAAAGATAGCTCCAGACACTCAAAGTTGGAGAAAGCCGACATCCTGGAGATGACGGTGAAGCACTTGAGGAACTTGCAGAGAGTTCAGATGACGGGTACGTACAGCTGCCCGCAGTCGCCACACCGAGCAGCTCTGCAGCGCTGCGGGGCTCGGGCTCCCCTCGGCCGGCGCAGTCCGGGCCTGCAGGTTGATTACGCAGCCCTGACGGCAGACCCCACAGTCCTGGGCAAGTACCGGGCGGGATTTAACGAGTGCATGAACGAGGTGACCCGTTTCCTCTCCACCTGCGAGGGGGTGAACACCGAGGTCCGGTCCCGACTCTTGAACCACCTCTCCGGGTGTCTAGGGCAGATGATCGCGATGAACTACCCGCAGCCCCCCAGCGCCCAGCAGGCGGCCCACCTCGGCCAGCCACTGCACGTCCAGCTCCCGTCGGCGGCCGGCACCGTGCCCATCAATGGAGTTTCCATGCCGTGCAAACTGAGCCCCGCCGAGGCGGTGTCGCCAAAGGTCTATGGGGGCTTCCAGCTAGTGCCCGCTACTGACGGACAGTTCGCCTTCCTCATACCCAACCCGGCCTtcgcctcctccaccaccccgGTTATCCCCCTGTACGCCAACACTAACTTGCCGGTTACCGTCAACTCCAGCCCCATCCACGCCACCTCTGCGCCCCCCGTCTCCTCTCCGGTGCAGGGAATGACTTCTTTCCCCGGGGTCTCGCAGGCTGTCAGCCCGCTGAGTGTCAGCGCAGGCTCGGACAGTGAGTCAGTCTGGAGGCCGTGGTAGACGTGGGGGGTTTATggaaaaatacatctaaatataAACCCgatgaaaaaaacacttaactATTCTTTTTCTAACAtctgaataaagaaaaaagccGTTCCGTTTTAAGGAACACTTGCTCTTCTGTTGGACTTTTaagagtttattatttattgtctgatTTCCAAAATTTGGGATGATATACCTGTATATATGATATTCACTCTTTGTGAAAacgatattaaaaaaaaaaaaaaaaaaaaattatatcaaaagtgttttttttctggaaagaCATATAGTTTTGTATAAACCTGTGAAAATGGTTGTTCAATGCcaaagcttttgttttatttgtttactagTTATGTGCTGGACAGACTCCTTCATGCGaaggatttttaaataataaaaacaattgaaatctacaatttcctttcttttctttgcgtTTCCCAACAAAGTCCCATACAAATGTAATTGGGTTCCGCAGTGGTAAAATAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002303 True 1686 mRNA 0.51 4 10926868 10929003

Neighbor

gene id symbol gene type direction distance location
AMCG00002302 NA coding downstream 136913 10755832 ~ 10789955 (-)
AMCG00002292 NA coding downstream 522988 10391726 ~ 10403880 (-)
AMCG00002284 NA coding downstream 682083 10240092 ~ 10244785 (-)
AMCG00002281 NA coding downstream 687335 10225288 ~ 10239533 (-)
AMCG00002282 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC107591103,LOC107737563,LOC103042472 coding downstream 729324 10189763 ~ 10197544 (-)
AMCG00002313 NA coding upstream 349423 11278426 ~ 11279133 (-)
AMCG00002312 NA coding upstream 364091 11293094 ~ 11304845 (-)
AMCG00002315 NA coding upstream 530060 11459063 ~ 11467699 (-)
AMCG00002319 NA coding upstream 555756 11484759 ~ 11505246 (-)
AMCG00002318 NA coding upstream 576872 11505875 ~ 11509991 (-)
G122319 NA non-coding downstream 112992 10812186 ~ 10813876 (-)
G122302 NA non-coding downstream 176087 10750411 ~ 10750781 (-)
G122226 NA non-coding downstream 701886 10223213 ~ 10224982 (-)
G122131 NA non-coding downstream 1075492 9848235 ~ 9851376 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 1305396 9621028 ~ 9621472 (-)
G122376 NA non-coding upstream 338561 11267564 ~ 11274527 (-)
G122432 NA non-coding upstream 478521 11407524 ~ 11409586 (-)
G122438 NA non-coding upstream 520563 11449566 ~ 11449791 (-)
G122530 NA non-coding upstream 672969 11601972 ~ 11628435 (-)
G122548 NA non-coding upstream 785406 11714409 ~ 11716145 (-)
AMCG00002301 NA other downstream 79667 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 646884 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 1073793 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 1093644 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 1125760 9757425 ~ 9801108 (-)
AMCG00002317 plekhm2 other upstream 584997 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 718908 11647911 ~ 11685089 (-)
G122597 NA other upstream 802614 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 919467 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 940604 11869607 ~ 11872862 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004346 her15.2 coding NC_007122.7 CM002895.2 41994287 ~ 41996957 (-)
grasscarp (Ctenopharyngodon idella) CI01000057_00409300_00412579 NA coding CI01000057 null 409168 ~ 412625 (-)