RNA id: AMCG00002303


Basic Information

Item Value
RNA id AMCG00002303
length 1686
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00002303
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10926868 ~ 10929003 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGCGGAGACACACGCCCGGGCGCAGCACAGAGCAGCGGCCGCTCACTGGGACCCGCACTCGACAGAGGATCTGAGCCAGAACTTTTTCCCTGCTGTTGCTGAACAGTGCGAGAACTTTGGGGATACCCTGATTTCTAGGTAACTAGAGTCTTTTGCAAAGAAAAggatctatatattttttaacaaatctaACTGAAGGGACATTTGGACCAGAATGCCTGCTGACACTATGGAGAAATCTACGGCTTCCCCGGTAGCGGGTATCCCGGCCAGTGGAGCTCACACTCCGGACAAGCCAAAGAATGCTAGTGAGCACAGAAAGTCTTCCAAGCCCATCATGGAGAAACGCCGCAGAGCCAGGATTAACGAGAGCCTGGGCCAGCTCAAAACGCTCATCTTGGATGCACTCAAAAAAGATAGCTCCAGACACTCAAAGTTGGAGAAAGCCGACATCCTGGAGATGACGGTGAAGCACTTGAGGAACTTGCAGAGAGTTCAGATGACGGGTACGTACAGCTGCCCGCAGTCGCCACACCGAGCAGCTCTGCAGCGCTGCGGGGCTCGGGCTCCCCTCGGCCGGCGCAGTCCGGGCCTGCAGGTTGATTACGCAGCCCTGACGGCAGACCCCACAGTCCTGGGCAAGTACCGGGCGGGATTTAACGAGTGCATGAACGAGGTGACCCGTTTCCTCTCCACCTGCGAGGGGGTGAACACCGAGGTCCGGTCCCGACTCTTGAACCACCTCTCCGGGTGTCTAGGGCAGATGATCGCGATGAACTACCCGCAGCCCCCCAGCGCCCAGCAGGCGGCCCACCTCGGCCAGCCACTGCACGTCCAGCTCCCGTCGGCGGCCGGCACCGTGCCCATCAATGGAGTTTCCATGCCGTGCAAACTGAGCCCCGCCGAGGCGGTGTCGCCAAAGGTCTATGGGGGCTTCCAGCTAGTGCCCGCTACTGACGGACAGTTCGCCTTCCTCATACCCAACCCGGCCTtcgcctcctccaccaccccgGTTATCCCCCTGTACGCCAACACTAACTTGCCGGTTACCGTCAACTCCAGCCCCATCCACGCCACCTCTGCGCCCCCCGTCTCCTCTCCGGTGCAGGGAATGACTTCTTTCCCCGGGGTCTCGCAGGCTGTCAGCCCGCTGAGTGTCAGCGCAGGCTCGGACAGTGAGTCAGTCTGGAGGCCGTGGTAGACGTGGGGGGTTTATggaaaaatacatctaaatataAACCCgatgaaaaaaacacttaactATTCTTTTTCTAACAtctgaataaagaaaaaagccGTTCCGTTTTAAGGAACACTTGCTCTTCTGTTGGACTTTTaagagtttattatttattgtctgatTTCCAAAATTTGGGATGATATACCTGTATATATGATATTCACTCTTTGTGAAAacgatattaaaaaaaaaaaaaaaaaaaaattatatcaaaagtgttttttttctggaaagaCATATAGTTTTGTATAAACCTGTGAAAATGGTTGTTCAATGCcaaagcttttgttttatttgtttactagTTATGTGCTGGACAGACTCCTTCATGCGaaggatttttaaataataaaaacaattgaaatctacaatttcctttcttttctttgcgtTTCCCAACAAAGTCCCATACAAATGTAATTGGGTTCCGCAGTGGTAAAATAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153396 lncRNA downstream 79667 10837804 ~ 10847201 (-) False AMCG00002301
TU153380 lncRNA downstream 112992 10812186 ~ 10813876 (-) True G122319
TU153358 lncRNA downstream 176087 10750411 ~ 10750781 (-) True G122302
TU153264 lncRNA downstream 646884 10279752 ~ 10279984 (-) False AMCG00002288
TU153259 lncRNA downstream 701886 10223213 ~ 10224982 (-) True G122226
TU153446 lncRNA upstream 338561 11267564 ~ 11274527 (-) True G122376
TU153515 lncRNA upstream 478521 11407524 ~ 11409586 (-) True G122432
TU153524 lncRNA upstream 520563 11449566 ~ 11449791 (-) True G122438
TU153646 lncRNA upstream 672969 11601972 ~ 11628435 (-) True G122530
TU153665 lncRNA upstream 785406 11714409 ~ 11716145 (-) True G122548
AMCG00002301 mRNA downstream 80884 10838915 ~ 10845984 (-) True AMCG00002301
AMCG00002302 mRNA downstream 136913 10755832 ~ 10789955 (-) True AMCG00002302
AMCG00002292 mRNA downstream 522988 10391726 ~ 10403880 (-) True AMCG00002292
AMCG00002288 mRNA downstream 646897 10269889 ~ 10279971 (-) True AMCG00002288
AMCG00002284 mRNA downstream 682083 10240092 ~ 10244785 (-) True AMCG00002284
AMCG00002313 mRNA upstream 349423 11278426 ~ 11279133 (-) True AMCG00002313
AMCG00002312 mRNA upstream 364091 11293094 ~ 11304845 (-) True AMCG00002312
AMCG00002315 mRNA upstream 530060 11459063 ~ 11467699 (-) True AMCG00002315
AMCG00002319 mRNA upstream 555756 11484759 ~ 11505246 (-) True AMCG00002319
AMCG00002318 mRNA upstream 576872 11505875 ~ 11509991 (-) True AMCG00002318
TU153139 other downstream 1073793 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1093644 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 3087457 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 6706991 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 7140324 3784236 ~ 3786544 (-) True G120927
TU153575 other upstream 595890 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 738752 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 802614 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 919467 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 942859 11871862 ~ 11872862 (-) False AMCG00002351

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008255 True 2343 mRNA 0.38 2 NC_007122.7 41994287 ~ 41996957 (-)
grasscarp (Ctenopharyngodon idella) CI01000057_00409300_00412579.mRNA True 697 mRNA 0.47 3 CI01000057 409168 ~ 412625 (-)