RNA id: AMCG00002292


Basic Information

Item Value
RNA id AMCG00002292
length 2778
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00002292
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10391726 ~ 10403880 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAACTAAAGCCATGACTGGGTACCTGGgactttttgtgtgttttctcctgCTGGACCCCAGCTGGGAATCAATACAAGGGATACACTGGTCCTACAAAGAGGGGGAAGGTCTGGACCCAATGCACTGGGCAGAGAATTACCCTGAGTGCGGTGGGAGGAGGCAGTCTCCCATCAACATCGAGAGGAGGCATGTCCGGTACAACGCCAAGATGGAGCAGCTGAAGCTGAGCGGCTACGACGGGCCGCAGAGAGGCACCTTCCTCATGACCAACAACGGGCACTCAGTTCAGATCGATCTGCCACCCACCATGGTGATCAGCAAGGGCCTGCCTGCCCGCTACACCGCCGTGCAGATGCACCTGCACTGGGGGGGCATGGACCTGGAGGCCAGCGGTGCTGAGCACACGGTGGACGGCATTCGGTACATGGCTGAGctgCACGTTGTTCACTACAACTCAGACAAATACAAAAGCTTTGCTGAAGCTGTAGACAAACCCGATGGACTAGCCGTGCTGGCTTTCTTCTATGAGGACGGGCATTTTGAGAACACTTACTACAGTGATTTCATTTCCAACCTGAAGTATGTGAAGTATACAGGCCAATCCATGAACATCAGTTCGGTGAATGTGCGGGCCATGCTCCCAGAGAACTTGTCCCATTTCTTCCGGTACCAGGGCTCTCTCACCACCCCACCCTGCTACGAGAGCATCTTGTGGACAGTCTTCGACACCCCTATTACTCTGTCCCACAGCCAGATAATGAAGCTAGAGAGCACCCTGATGGACCCGGAAAACCAGACCCTGTGGAATGACTACAGGGTGGCGCAGTCGCTGAATGACCGCGTGGTGGAGTCCTCTTTCCTGCCGAGGCTTGGCATAGGCGcGTTTTGTCGGCAAGAAGAAATTGAGACCAAATTATTGAAGATAGAGGGAATGCTGGACTCCTTCGGAAAGCAGATTCGGGAAGCCCAGAGCATGCTGTCCCCACTGGTGTTCCAGTTCCCGGAGAGGAACACAAAGAGCTACGTCCAGGTGCACCGTACACACAGCCTGGCTCTGTCCTCCTTCACCGTGTGCGCCCACATCAAGATCCAGATCCCCAGCGTGCACACCATCCTGTCCTACTCCAGCGCTGTCCATGACAATGAGCTCATGATCACAGCCGGCTACGAGGTGGGGCTGTGGCTGGGCAACGAGTTTATCAGCTTCCCCCACACCTTCCGCTCCCAGGACTGGGATAACTACTGCATGACCTGGGCCTCCCACTCGGGTGGCGCAGAGCTGTGGATCAATGGCATGGTGAGCGAGGAGCAGTACATGAAGCGGGGCTACACTATCAGGGCGGGGGGCACCCTTATCCTAGGCAAGGACCAGGATGGCCTGCTGGGCATTTCTGACGAGGACGCCTTCGTGGGCCACATGACCGACGTCAACATGTGGGACTATGTGCTTGGCTCCTCTGAGATCCGGGAGCAGATGCAGTGCAGCAACAACACCCAGAAGGGCAATGTGCTCGCCTGGGGGAGGACGCCTGTCAGCCTGTACGGAGGGGTGAGACTGGAGACCGACTACAGGTGTCCCTAATCGGGATGCCCTGGAAACAGGCGCTTGCAGGCCCTGCCCCCTACATCCAGTGCCGCCCACTGCACTGTGACATCACAATAGTGTGCCGCAATCCTACTAAGGGGGTTACACACCAGACCCTAGCTATTGCCACAGTTCCCATTCAGCGCTGCCTAGAAGCTTAGCTCAGAGACCGCTGGATCGAGTCTAATGCAGCTTTTAAAGGGAGctgtagcaaaataaataaaaaagtaaacaggATCTCTTGATCAGACCTGCTCTCCAGACCTATGACTAATATGACTTGTTCAGACAGTGAGTCCAGTGACTACTTTGTAGAGGTTTActtcatcttttttatttagtctCATTAAAGCACTGTCTGTGATGGGTAGAGCACGTTAACCTGTACACACAATGGAAGTTAACCAaaactattatattttatattcagtctaataagaaaaatacaatgctttGGGAATTTTCTACGTGTgctactttttgttttatccatttatttttaatagctgGGGATCTGTTCCAAACAGGGCCTGCACAGTAGCAGCAGTAAGTGAATTTGTAACGTGTATGGTGTTCAACAATATAGAACTTGTATCTAATTCAGATCTGTATatctacaataaataattaaatttcaGCAATCTATTATTTAAGGGAATTTAATACAGCTAATGGCCACAAGATTGTGGATAAGAGTTTTTCCAGGAAactatttgctgtttttttttttgtaagactTTTTTTGAAGATCTTCAGAAATGTTGTAATGTAAGACCTTACTGTAGAATAGACACAACtatatttaatgtgttattaaatggtTATTAACTGCCTATATATTTAACTGTCTAGTagaggggttcccaaagtgtggcccccgaggatgtttggtgcggccccccaaagccagcCTTCAACCACCctttttctgaacctttactatatttttacacttcatgaacattttctgttataaattgcaaatgtaatttgggggaaaataataaaacaacaattaaagttaataaatgttccctaacagaaataaaaaggtataatctgtggttCATTTGGTACTACGGCCCCCCCATCCaatgcaacctccggaaattgtccctccatcaccagacattgtgAACCCCTGGTCTAGTGGCAGAAGTGCGattccaataaaaacaaatacaaattaat

Function

GO: NA

KEGG:

id description
K01672 CA; carbonic anhydrase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153264 lncRNA downstream 111742 10279752 ~ 10279984 (-) False AMCG00002288
TU153259 lncRNA downstream 166744 10223213 ~ 10224982 (-) True G122226
TU153141 lncRNA downstream 540350 9848235 ~ 9851376 (-) True G122131
TU153107 lncRNA downstream 615731 9757425 ~ 9775995 (-) False AMCG00002275
TU153025 lncRNA downstream 770254 9621028 ~ 9621472 (-) True G122061
TU153358 lncRNA upstream 346531 10750411 ~ 10750781 (-) True G122302
TU153380 lncRNA upstream 408306 10812186 ~ 10813876 (-) True G122319
TU153396 lncRNA upstream 433924 10837804 ~ 10847201 (-) False AMCG00002301
TU153446 lncRNA upstream 863684 11267564 ~ 11274527 (-) True G122376
TU153515 lncRNA upstream 1003644 11407524 ~ 11409586 (-) True G122432
AMCG00002288 mRNA downstream 111755 10269889 ~ 10279971 (-) True AMCG00002288
AMCG00002284 mRNA downstream 146941 10240092 ~ 10244785 (-) True AMCG00002284
AMCG00002281 mRNA downstream 152193 10225288 ~ 10239533 (-) True AMCG00002281
AMCG00002282 mRNA downstream 194182 10189763 ~ 10197544 (-) True AMCG00002282
AMCG00002283 mRNA downstream 298623 10079157 ~ 10093103 (-) True AMCG00002283
AMCG00002302 mRNA upstream 351952 10755832 ~ 10789955 (-) True AMCG00002302
AMCG00002301 mRNA upstream 435035 10838915 ~ 10845984 (-) True AMCG00002301
AMCG00002303 mRNA upstream 522988 10926868 ~ 10929003 (-) True AMCG00002303
AMCG00002313 mRNA upstream 874546 11278426 ~ 11279133 (-) True AMCG00002313
AMCG00002312 mRNA upstream 889214 11293094 ~ 11304845 (-) True AMCG00002312
TU153139 other downstream 538651 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 558502 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 2552315 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 6171849 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 6605182 3784236 ~ 3786544 (-) True G120927
TU153575 other upstream 1121013 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 1263875 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 1327737 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 1444590 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 1467982 11871862 ~ 11872862 (-) False AMCG00002351

Expression Profile