RNA id: TCONS_00008255


Basic Information

Item Value
RNA id TCONS_00008255
length 2343
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_004346
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 41994287 ~ 41996957 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCatatatgtaaattaaaatataaaaaccccACATCAAGCTGAGATTGCAATCTTTCTCGTAAATGAatcaattttgtaaataaatcagttttgggAAGTTTAACAAGttcattaaatgtttatatttgattGAATAAGTTTAATTGTGGTAAATATGTAATGATTGTGGTAAGATCAAGTTTGAAATTTAAATTCTGAAACAAACTCACTTCAAATGCAGCAAATTCATATTAAACTTAAACAAATTGGAAATAATCTGATTAAATGGCACAGTAAATCATATATTTGCAacatgcattattattttaatttccaaatATTATACAGTGATTATGCCTTTAAATTAAACCAATAACTGCTTCTAAATGTTGTTATTAAAAGAATATTTATATGAATGTTTCTTCATTTTAATTCACAGTATCTTcactaaaaatattatgtttacaaaatattaaatgaagaggaagattataaaatattaaattaacagCATTGGCTTTAGTATgttaaaatgcatcaaaataaagcAGAAATACTTGCATGCAGTTCAATCTCACATTATTGCCACAATTTAATTATCGGAAAAACGGATTGACCTATTGATTAATTGAAACCAGAGAAAATAAGTGTAAGCCCTGTGGGATTTGTACAGCCcgtgtttgatttgatttgtgtaGGACGCCTCATCCAGCGGCCTCAGAGTGTGGGAAAGCTAATCCTGACTGGGACTCATGGCTTTGTAATGCTAATGAGCTCCTATAAATAGAGCAGCGAGACCCTCATTCCCGACACAAACCCCTCGCTCTGCTCAGAGAAACAGCATCTCTCCTGAAGAAGCAATGGCTCCTGTGTATATGACTGAATACTCCAAGCTTTCCAACAAGGAGAAGCACAAATTGCGAAAGCCAGTGGTGGAAAAGATGCGCAGAGATCGCATCAACAACTGCATCGAGCAGCTCAAGTCCATGCTGGAGAAAGAGTTCCAGCAGCAGGATCCCAACGCCAAGCTGGAGAAAGCCGACATCCTGGAGATGACGGTGGTTTTCCTCAAGCAGCAGCTGCGGCCCAAGACTCCACAGAACGCTCAGATCGAGGGCTACTCGCAGTGCTGGAGGGAGACCATCAGCTTTCTGTCTGTGGGCTCCGAGGCTGTGGCTCAACGTCTCCAGCAAGAAGCCCGGAGATCAGCAGCTCCAGAGCTCACACACACGTCTGAAGCTCCCcatcagcagcacacacacatcaagCAGGAGCCGCGGGCGCACGCTCCGCTCTGGAGACCCTGGTAGAGACGCTCGAACACTAGATGGTGGTTTACCGTCTCTTATGTAGGAGATTCTCCATTTACTATAGTACATCACTGATTCACATCGTGTGAAGAAATGAGAGATTCACCATGTGAACGCCTCGTCTTCTGCTGACGTTTAGATGTTATGATCAGAGGTTTATTAGTGTAGTTTTCCTCATGGATGGACATTAATATCAGACTCTGGTAGAGACGCTCAAACACTAGATGGTGCTTTATAGTCTCTTATCATGTAGGAGATTCTCCATTTACTCTAGTCATTTCTTTTGAAAGAGCACGTCACTTATTCTCATCGTGTGAAGAAATGAGAGATTCACCATGTGAACGCCTCGTCTTCTGCTGATGTTTATATGTTATGATATGATCAGAGGTTTATTATTGCAACACCTCTGTAGTTTTCCTCATGGATGGACTTTATTTTCTAGACATTTCTTCATGATGAAGAGTCAATGTTGAACTCCTGTGGAGTTGTGGATTATATGTGATCATTTGTGCATTATCAATGCTTTATTGGtgtttctttatatgaaagatgtgaattttgacttatttataatatatgattgtataatgttattgaaataaacacattttgaactGAAACACTTTCTGCTGTAGTTGATTTCTCATATTAAACTCCGCTTGCTTCATTAATAAACGTTTGAAATGCAAATTGTGCTTCTGTAATAAACTCACTGGTAAAATAATGTCCCTTTAGTTCATgtattactaacatgaacaaattatGCACAGCACACTCATTACAGTCTctttgtttacattagttaatggtAGTAAATTTATTCATAGTTACAGACACTGAGCCTCAAACACTATGTAGGAGATTCTCCATTTCTGAAGTACGTCACTTATTCTCATCGTGTGAAGAAATGAGAGATTCACCATGTGAACGCCTCGTCTTCTGCTGATGTTTAGATGTTATGATATGATCAGAGGTTTATTATTGGAACACCTCTGTAGTTTTCCTCATGCACATTAATACCAGACCCAGATAGagacagttgtagtcagaat

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070627-1 Is expressed in central nervous system and retina. Orthologous to human HES5 (hes family bHLH transcription factor 5).

Ensembl:

ensembl_id ENSDART00000055706

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008864 lncRNA downstream 284230 41699575 ~ 41710057 (-) True XLOC_004340
TCONS_00008863 lncRNA downstream 677638 41283291 ~ 41316649 (-) True XLOC_004338
TCONS_00008247 lncRNA downstream 793015 41192329 ~ 41201272 (-) True XLOC_004336
TCONS_00008490 lncRNA downstream 1044469 40948889 ~ 40949818 (-) True XLOC_004333
TCONS_00008242 lncRNA downstream 1099042 40893766 ~ 40895245 (-) True XLOC_004332
TCONS_00008865 lncRNA upstream 7206 42004163 ~ 42026598 (-) True XLOC_004347
TCONS_00008866 lncRNA upstream 19797 42016754 ~ 42019865 (-) True XLOC_004348
TCONS_00008867 lncRNA upstream 45605 42042562 ~ 42044281 (-) True XLOC_004349
TCONS_00008492 lncRNA upstream 116115 42113072 ~ 42125282 (-) True XLOC_004352
TCONS_00008493 lncRNA upstream 124898 42121855 ~ 42124252 (-) False XLOC_004353
TCONS_00008254 mRNA downstream 27433 41966117 ~ 41966854 (-) True XLOC_004344
TCONS_00008253 mRNA downstream 140413 41846059 ~ 41853874 (-) True XLOC_004343
TCONS_00008252 mRNA downstream 207765 41782683 ~ 41786522 (-) True XLOC_004342
TCONS_00008251 mRNA downstream 215006 41712391 ~ 41779281 (-) True XLOC_004341
TCONS_00008248 mRNA downstream 771316 41216191 ~ 41222971 (-) False XLOC_004337
TCONS_00008256 mRNA upstream 65110 42062067 ~ 42099645 (-) True XLOC_004350
TCONS_00008257 mRNA upstream 104704 42101661 ~ 42106310 (-) True XLOC_004351
TCONS_00008258 mRNA upstream 131595 42128552 ~ 42134968 (-) True XLOC_004354
TCONS_00008259 mRNA upstream 153939 42150896 ~ 42230491 (-) True XLOC_004355
TCONS_00008260 mRNA upstream 307628 42304585 ~ 42418374 (-) False XLOC_004357
TCONS_00008250 other downstream 619161 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 909924 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 1298151 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 1811491 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 2904296 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 2126370 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 2340200 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 2609894 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 3434576 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00002303 True 1686 mRNA 0.51 4 CM030136.1 10926868 ~ 10929003 (-)