XLOC_004332 (CABZ01044765.1)


Basic Information

Item Value
gene id XLOC_004332
gene name CABZ01044765.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40893766 ~ 40895245 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008242
ttcagatacctgtacgtattcgcaggggtttcgtgtcaaatgccttttatatgcagtactaaatagctgtcctgatcgcaggtgtttcatgtatgatcaattttatatatattaacatcaaatacctgtcctgatcccaggtgtttcatgtatgatcacttttatattatatacattaacatcagatacctgtcctgatctcaggggtttcatgtatgatcacttttatattagttaacatcagatacctgtcctgatcccaggggtttcatgtatgatcacttttatattagttaacatcagatacctgtcctgatcccaggggtttcatgtatg

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105501

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008242 True 336 lncRNA 0.37 3 40893766 40895245

Neighbor

gene id symbol gene type direction distance location
XLOC_004331 CABZ01083815.1 coding downstream 33296 40858654 ~ 40860470 (-)
XLOC_004330 FP236327.1 coding downstream 132448 40760718 ~ 40761318 (-)
XLOC_004329 tas1r3 coding downstream 151259 40731602 ~ 40742507 (-)
XLOC_004328 ccdc114 coding downstream 165386 40713723 ~ 40728380 (-)
XLOC_004327 si:ch211-222l21.1 coding downstream 197630 40677616 ~ 40696136 (-)
XLOC_004333 NA coding upstream 53644 40948889 ~ 40949818 (-)
XLOC_004334 zgc:175088 coding upstream 182946 41078191 ~ 41084363 (-)
XLOC_004335 dnajc11b coding upstream 215152 41110397 ~ 41132296 (-)
XLOC_004336 CABZ01087025.3 coding upstream 297084 41192329 ~ 41201272 (-)
XLOC_004337 mrps16 coding upstream 320946 41216191 ~ 41222971 (-)
XLOC_004063 CR854846.1 misc downstream 24766088 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 28202075 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 28271999 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 28302470 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 28380504 12512966 ~ 12513262 (-)
XLOC_004323 NA non-coding downstream 431279 40460851 ~ 40462487 (-)
XLOC_004319 CT033813.1 non-coding downstream 710970 40182681 ~ 40182796 (-)
XLOC_004313 CR847998.1 non-coding downstream 1248456 39637740 ~ 39645310 (-)
XLOC_004338 NA non-coding upstream 388046 41283291 ~ 41316649 (-)
XLOC_004339 CR759952.1 non-coding upstream 479766 41375011 ~ 41375126 (-)
XLOC_004340 NA non-coding upstream 804330 41699575 ~ 41710057 (-)

Expression


Co-expression Network