XLOC_004328 (ccdc114)


Basic Information

Item Value
gene id XLOC_004328
gene name ccdc114
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40713723 ~ 40728380 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008237
GTTGCTAACAACTTTTTCTACATGGGGAGGAAGAGTTGATATATTAAACCACCTGAAGACTGATAACCGTAAGTCGTGTTTTGTGactataatcatcatcatcatcacaatgCCTCGTGGAAGATCTGCGATCAGTGTCCTCTCCGACAGCAGTGACTTGGACTTTGATGGAATTGCCGAGACGGAGATGGAAAAGCTCCAGAGACAGTTTCGCATTACAGAGGGAGATCGACAGGCCTACAGCATCCAGTCACAAGAAATTATACGCAAACAACGTCAGGAGATTTCCAAGCTGCGTGAGGAACAGGATGAGCTGCTGCGAACTCTGCATGTGCTCGAGTCCCAGTCGCGCAGATCGAGTGAAACTCAGGAGACTGAGACCATACAAACTCTGCTGGAGCAACAAAACATGCAGGAGGATCAACTGGAAAAAGAGAAGCAAACCCAAACTCAACTGGAGCAGGAGATTATGAATGTGGAGAAGAAGTTGGTGGAAGCCAGAAGAGAGGACATTACAACTTCGCAAAGTCATACGTCTCAGACCCGCCACACTCAGAAAGCCATACGAACACTGGAGAACAAACTGGACCGGGCTCTTATTCGCTTTAATGAGCAGCTGACGAAGAACAGCCAGCTCAGAGAAGAGCTTGAGACGCTTAGGATGGAGCGTGTGCGATTCCAGCAGCTGCAACGCAGACTGGAGAAGGTTTTGCAAGATGTTCGTAAGGATATTGGTGAAGTTATCAACATGTCCACCACAGCATATGAGGCAAGAGTGGAAGCTCAGACCAAAATGACCATGATGAAAGAAAAGGAGATGAAGGATCTTGCCCAGTATTCATCTGATGTAAAGGAGCTGGAGAGAGTCATTGCTCATGAACACAGACTCAAAGAGTTTATGAGCACCAAGAGTAATGAGAGAAACGCTCTGGATGAAGCACAGGAAATCAGCCGCAGAAACGAGATGAAGGAGCAGAGGAAGGCAGATGCTGGAGAAGAGAAATGTGAAACTCTAGAAGAGGTTTTCCATCGTATTCAGACGGTGACTGGAGAAGAGAATCTGGAGAAGCTAGTTACAAAATTCATTGAGGTTGAGGACAGGAACTTTGCTCTCTTCAACTATGTGAACGAACAGAACACGGAAGCTGACAGACTGAGAGAGGAAATCCATCAGATTAAAGAAGAGATGGAGCAGCTGCGCATGAAAGGGCTCCAACAGGAAGAGGAAAATCAGCTGGCTTTAAAACAGGTGAAGGATCTTCAGCAGGAGTGTGAAATACAAGCGCAGCAGTATGAAGCTCAAGCTGAAGACATCAGCAAGACCCTTGATCAGATCAAAACAGGGATTGACAGTGTGTTCAGTAAGATGGACTGTGATCGAGCGCTGATGGACGACATGTTGGGCTCTTCTTCTGGGATCAGAGACAGTAACATCATGACGTACCTCAGTCTGGTGGAGCAGAGGACCAGTGAACTGCTCACCATTCAGGCCTTCATTAAATCAAAGGACCTGGAGAAGAATTACGACCTGAAAGAGGTCGCTCAGTTCCTGCTGGGGCAGAAAGCAGATGTGCAGAAACAAGCATTGATGGTTCAGCCTCACATTACCAGGCATGATTATGAAGCAGAGGATTCGTCTCTTACTGATGAGGAGGATCGACCTTTGACTCATCATGAACTTCATCGGCACATTATGATGAGCAGTGTCCTTCATAAAGACGAGTCTCTGCGTGTTGGAGGAGGAAAAGATGTGAAAACCCCAAAAACCAGCACATTTTCCAGCAGCAGACAGCGCTCGCTAGAGGACTAACACACCAGATCCGGttttataataaagaaaagaTGCATATGACAGGGTTATATTCCTAGATAATTCATTACAAGATTATAAATGGCATTATTCACTTATCAAACTTTATGCTGGTCTTTGAAAAAATATTACTGgtttaaatgagtaaatgatgacatgaaCAGCTccacaaaacaaacagaagaGGGCAGCATTGAGCCATATTTGGATCTCGGATCATACCCGTAATGCTTTTCACATCTGTCATGTTTATAATGAGTCTGAACGAATCAAAATGTTCTTTTGTTTGAATTGTTTGGCAAATAATCCATCAAGTGGCCTCTTGCTTTTAAATTTCTCATGATTATATTTAAGAGCTGCAGAGTGGCAGCAATAAAAGTTTGGCAAAAGAGCA

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0036158 outer dynein arm assembly biological_process
GO:0005930 axoneme cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-110 Predicted to be involved in cilium movement and outer dynein arm assembly. Located in axoneme. Is expressed in several structures, including Kupffer's vesicle; basal plate midbrain region; forerunner cell group; nervous system; and spinal cord neural tube. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 20. Orthologous to human ODAD1 (outer dynein arm docking complex subunit 1).

Ensembl:

ensembl_id ENSDARG00000015010

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008237 True 2204 mRNA 0.44 15 40713723 40728380

Neighbor

gene id symbol gene type direction distance location
XLOC_004327 si:ch211-222l21.1 coding downstream 17587 40677616 ~ 40696136 (-)
XLOC_004326 prxl2b coding downstream 66486 40622310 ~ 40647237 (-)
XLOC_004325 miip coding downstream 193837 40505044 ~ 40519886 (-)
XLOC_004324 si:dkeyp-61b2.1 coding downstream 209553 40467618 ~ 40504170 (-)
XLOC_004323 NA coding downstream 251236 40460851 ~ 40462487 (-)
XLOC_004329 tas1r3 coding upstream 3222 40731602 ~ 40742507 (-)
XLOC_004330 FP236327.1 coding upstream 32338 40760718 ~ 40761318 (-)
XLOC_004331 CABZ01083815.1 coding upstream 130274 40858654 ~ 40860470 (-)
XLOC_004332 CABZ01044765.1 coding upstream 165386 40893766 ~ 40895245 (-)
XLOC_004333 NA coding upstream 220509 40948889 ~ 40949818 (-)
XLOC_004063 CR854846.1 misc downstream 24586045 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 28022032 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 28091956 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 28122427 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 28200461 12512966 ~ 12513262 (-)
XLOC_004319 CT033813.1 non-coding downstream 530927 40182681 ~ 40182796 (-)
XLOC_004313 CR847998.1 non-coding downstream 1068413 39637740 ~ 39645310 (-)
XLOC_004312 NA non-coding downstream 1408560 39303597 ~ 39305163 (-)
XLOC_004311 NA non-coding downstream 1500958 39208184 ~ 39212765 (-)
XLOC_004336 CABZ01087025.3 non-coding upstream 463949 41192329 ~ 41201272 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_11413688_11420833 NA coding CI01000306 null 11413664 ~ 11420833 (-)