RNA id: TCONS_00008237


Basic Information

Item Value
RNA id TCONS_00008237
length 2204
RNA type mRNA
GC content 0.44
exon number 15
gene id XLOC_004328
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40713723 ~ 40728380 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGCTAACAACTTTTTCTACATGGGGAGGAAGAGTTGATATATTAAACCACCTGAAGACTGATAACCGTAAGTCGTGTTTTGTGactataatcatcatcatcatcacaatgCCTCGTGGAAGATCTGCGATCAGTGTCCTCTCCGACAGCAGTGACTTGGACTTTGATGGAATTGCCGAGACGGAGATGGAAAAGCTCCAGAGACAGTTTCGCATTACAGAGGGAGATCGACAGGCCTACAGCATCCAGTCACAAGAAATTATACGCAAACAACGTCAGGAGATTTCCAAGCTGCGTGAGGAACAGGATGAGCTGCTGCGAACTCTGCATGTGCTCGAGTCCCAGTCGCGCAGATCGAGTGAAACTCAGGAGACTGAGACCATACAAACTCTGCTGGAGCAACAAAACATGCAGGAGGATCAACTGGAAAAAGAGAAGCAAACCCAAACTCAACTGGAGCAGGAGATTATGAATGTGGAGAAGAAGTTGGTGGAAGCCAGAAGAGAGGACATTACAACTTCGCAAAGTCATACGTCTCAGACCCGCCACACTCAGAAAGCCATACGAACACTGGAGAACAAACTGGACCGGGCTCTTATTCGCTTTAATGAGCAGCTGACGAAGAACAGCCAGCTCAGAGAAGAGCTTGAGACGCTTAGGATGGAGCGTGTGCGATTCCAGCAGCTGCAACGCAGACTGGAGAAGGTTTTGCAAGATGTTCGTAAGGATATTGGTGAAGTTATCAACATGTCCACCACAGCATATGAGGCAAGAGTGGAAGCTCAGACCAAAATGACCATGATGAAAGAAAAGGAGATGAAGGATCTTGCCCAGTATTCATCTGATGTAAAGGAGCTGGAGAGAGTCATTGCTCATGAACACAGACTCAAAGAGTTTATGAGCACCAAGAGTAATGAGAGAAACGCTCTGGATGAAGCACAGGAAATCAGCCGCAGAAACGAGATGAAGGAGCAGAGGAAGGCAGATGCTGGAGAAGAGAAATGTGAAACTCTAGAAGAGGTTTTCCATCGTATTCAGACGGTGACTGGAGAAGAGAATCTGGAGAAGCTAGTTACAAAATTCATTGAGGTTGAGGACAGGAACTTTGCTCTCTTCAACTATGTGAACGAACAGAACACGGAAGCTGACAGACTGAGAGAGGAAATCCATCAGATTAAAGAAGAGATGGAGCAGCTGCGCATGAAAGGGCTCCAACAGGAAGAGGAAAATCAGCTGGCTTTAAAACAGGTGAAGGATCTTCAGCAGGAGTGTGAAATACAAGCGCAGCAGTATGAAGCTCAAGCTGAAGACATCAGCAAGACCCTTGATCAGATCAAAACAGGGATTGACAGTGTGTTCAGTAAGATGGACTGTGATCGAGCGCTGATGGACGACATGTTGGGCTCTTCTTCTGGGATCAGAGACAGTAACATCATGACGTACCTCAGTCTGGTGGAGCAGAGGACCAGTGAACTGCTCACCATTCAGGCCTTCATTAAATCAAAGGACCTGGAGAAGAATTACGACCTGAAAGAGGTCGCTCAGTTCCTGCTGGGGCAGAAAGCAGATGTGCAGAAACAAGCATTGATGGTTCAGCCTCACATTACCAGGCATGATTATGAAGCAGAGGATTCGTCTCTTACTGATGAGGAGGATCGACCTTTGACTCATCATGAACTTCATCGGCACATTATGATGAGCAGTGTCCTTCATAAAGACGAGTCTCTGCGTGTTGGAGGAGGAAAAGATGTGAAAACCCCAAAAACCAGCACATTTTCCAGCAGCAGACAGCGCTCGCTAGAGGACTAACACACCAGATCCGGttttataataaagaaaagaTGCATATGACAGGGTTATATTCCTAGATAATTCATTACAAGATTATAAATGGCATTATTCACTTATCAAACTTTATGCTGGTCTTTGAAAAAATATTACTGgtttaaatgagtaaatgatgacatgaaCAGCTccacaaaacaaacagaagaGGGCAGCATTGAGCCATATTTGGATCTCGGATCATACCCGTAATGCTTTTCACATCTGTCATGTTTATAATGAGTCTGAACGAATCAAAATGTTCTTTTGTTTGAATTGTTTGGCAAATAATCCATCAAGTGGCCTCTTGCTTTTAAATTTCTCATGATTATATTTAAGAGCTGCAGAGTGGCAGCAATAAAAGTTTGGCAAAAGAGCA

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0036158 outer dynein arm assembly biological_process
GO:0005930 axoneme cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-110 Predicted to be involved in cilium movement and outer dynein arm assembly. Located in axoneme. Is expressed in several structures, including Kupffer's vesicle; basal plate midbrain region; forerunner cell group; nervous system; and spinal cord neural tube. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 20. Orthologous to human ODAD1 (outer dynein arm docking complex subunit 1).

Ensembl:

ensembl_id ENSDART00000023745

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008235 lncRNA downstream 34957 40678207 ~ 40678766 (-) False XLOC_004327
TCONS_00008230 lncRNA downstream 66517 40637354 ~ 40647206 (-) False XLOC_004326
TCONS_00008862 lncRNA downstream 251236 40460851 ~ 40462487 (-) True XLOC_004323
TCONS_00008214 lncRNA downstream 1068413 39637740 ~ 39645310 (-) True XLOC_004313
TCONS_00008861 lncRNA downstream 1408560 39303597 ~ 39305163 (-) True XLOC_004312
TCONS_00008240 lncRNA upstream 32338 40760718 ~ 40761318 (-) True XLOC_004330
TCONS_00008241 lncRNA upstream 130274 40858654 ~ 40860470 (-) True XLOC_004331
TCONS_00008242 lncRNA upstream 165386 40893766 ~ 40895245 (-) True XLOC_004332
TCONS_00008490 lncRNA upstream 220509 40948889 ~ 40949818 (-) True XLOC_004333
TCONS_00008247 lncRNA upstream 463949 41192329 ~ 41201272 (-) True XLOC_004336
TCONS_00008234 mRNA downstream 32634 40678121 ~ 40681089 (-) False XLOC_004327
TCONS_00008232 mRNA downstream 32669 40677616 ~ 40681054 (-) False XLOC_004327
TCONS_00008233 mRNA downstream 32712 40677978 ~ 40681011 (-) False XLOC_004327
TCONS_00008228 mRNA downstream 66486 40622310 ~ 40647237 (-) False XLOC_004326
TCONS_00008229 mRNA downstream 66529 40622828 ~ 40647194 (-) False XLOC_004326
TCONS_00008238 mRNA upstream 3222 40731602 ~ 40742424 (-) False XLOC_004329
TCONS_00008239 mRNA upstream 3222 40731602 ~ 40742507 (-) True XLOC_004329
TCONS_00008243 mRNA upstream 349811 41078191 ~ 41084358 (-) False XLOC_004334
TCONS_00008245 mRNA upstream 382017 41110397 ~ 41132296 (-) False XLOC_004335
TCONS_00008246 mRNA upstream 387422 41115802 ~ 41130239 (-) True XLOC_004335
TCONS_00008236 other downstream 17587 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 530927 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 1623732 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008207 other downstream 1763972 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008194 other downstream 2538573 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008244 other upstream 349811 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008250 other upstream 646631 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008295 other upstream 3394947 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 3608777 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 3878471 44606851 ~ 44613734 (-) False XLOC_004396

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_11413688_11420833.mRNA True 1779 mRNA 0.48 14 CI01000306 11413664 ~ 11420833 (-)