RNA id: TCONS_00008241


Basic Information

Item Value
RNA id TCONS_00008241
length 887
lncRNA type lincRNA
GC content 0.36
exon number 3
gene id XLOC_004331
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40858654 ~ 40860470 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaacattatcattAATTTCTATAAAAGTCTTTACAAGTCCATCTAAACAAACAAGTCAAGCTAGATGTTTTTACTGCAATGCACTTGAACACATTTATATAACTGCATGTGTTATAAATTAATTACCAATCTTATTTAggagaaataaatgaaaagacCTCAAGCCTTTTTTGCAATATTAACAtgcaaattttaattatttattttctgttttacagcTTTTTATCTTTTGTAAAAAGGCAGATGCACAAAACTTCAAAAACGTGTCCATTAATAGACTAATGTAAGTCGATTTCTGCTGTATTGCATAGATTGCAAATATTTACCACTGAAAATGACATTAATGTTTTTCCCCATCTAGACAAGGCAGTGTTATTGCCGAAAGCACTGCAGAATATAACTATCCCAACAACAACACCCAAATACAGTTTCTAAATAACAATTTGGGGCAAACGCTTGAAAGAATATTAAATGACTCCGAATCATTTCAAAATCTCAGCGCAGCTCTCAATGCATCAATTGAGGTCACTCGAATAACCATGGGCAAAGTTGAAATATTGAATATTTCACAGGTAAAACCATTTGTGAACTGTCCAGTCAATCTTGAAAACTTAACGCAAGAGCTGGACAATGGAGTATGGGTGTGTGTGGGACCATGCAAAGCAAATCCAGACTTCTGCAATCATCATGGTGAATGCCAAAATGCAATAAATGGCGCAGTGTGCAACTGTACAAGCTCTTACTTTGAGAAGTACTATGGAGATCAGTGCGAGCAGTACAGCAGAGGTCCAGGTTTCTACGCTGTTCTCTTCGGCAGTTTAGCAGCTTTAGCTCTACTCATCATCATTACAGTTGTGATGGTTGTAGTTTTTCACAGAGCCAGAAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000172917

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008240 lncRNA downstream 97336 40760718 ~ 40761318 (-) True XLOC_004330
TCONS_00008235 lncRNA downstream 179888 40678207 ~ 40678766 (-) False XLOC_004327
TCONS_00008230 lncRNA downstream 211448 40637354 ~ 40647206 (-) False XLOC_004326
TCONS_00008862 lncRNA downstream 396167 40460851 ~ 40462487 (-) True XLOC_004323
TCONS_00008214 lncRNA downstream 1213344 39637740 ~ 39645310 (-) True XLOC_004313
TCONS_00008242 lncRNA upstream 33296 40893766 ~ 40895245 (-) True XLOC_004332
TCONS_00008490 lncRNA upstream 88419 40948889 ~ 40949818 (-) True XLOC_004333
TCONS_00008247 lncRNA upstream 331859 41192329 ~ 41201272 (-) True XLOC_004336
TCONS_00008863 lncRNA upstream 422821 41283291 ~ 41316649 (-) True XLOC_004338
TCONS_00008864 lncRNA upstream 839105 41699575 ~ 41710057 (-) True XLOC_004340
TCONS_00008239 mRNA downstream 116147 40731602 ~ 40742507 (-) True XLOC_004329
TCONS_00008238 mRNA downstream 116230 40731602 ~ 40742424 (-) False XLOC_004329
TCONS_00008237 mRNA downstream 130274 40713723 ~ 40728380 (-) True XLOC_004328
TCONS_00008234 mRNA downstream 177565 40678121 ~ 40681089 (-) False XLOC_004327
TCONS_00008233 mRNA downstream 177643 40677978 ~ 40681011 (-) False XLOC_004327
TCONS_00008243 mRNA upstream 217721 41078191 ~ 41084358 (-) False XLOC_004334
TCONS_00008245 mRNA upstream 249927 41110397 ~ 41132296 (-) False XLOC_004335
TCONS_00008246 mRNA upstream 255332 41115802 ~ 41130239 (-) True XLOC_004335
TCONS_00008248 mRNA upstream 355721 41216191 ~ 41222971 (-) False XLOC_004337
TCONS_00008249 mRNA upstream 356297 41216767 ~ 41220794 (-) True XLOC_004337
TCONS_00008236 other downstream 162518 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 675858 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 1768663 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008207 other downstream 1908903 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008194 other downstream 2683504 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008244 other upstream 217721 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008250 other upstream 514541 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008295 other upstream 3262857 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 3476687 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 3746381 44606851 ~ 44613734 (-) False XLOC_004396

Expression Profile

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