RNA id: TCONS_00008317


Basic Information

Item Value
RNA id TCONS_00008317
length 852
RNA type processed_transcript
GC content 0.46
exon number 4
gene id XLOC_004396
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44605727 ~ 44622478 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGGGTGCGGAGCTGGATTACTGTAAGATGTTTGGATCTGCATGGCTGAGGGCTGGAGGTCACAGAGAAGCGGAGAAAAACAACCCGAACACAGACTTCATGACTGAACACCCGAGATACCTCACGCTCATCCAGACCATAACGTTTCTTTGTCCAGAGGATTTGGAGAGGAAGCCCATTGAGAAGAAGCTGCCAGggTCGATGATCGTTCAGAAGGTGAAGGGGCTTTTACACCGGCTGCTCAAATTACCAGGAGTGGAGTTAAAGCTCACATACACCTGCGCCAAGATGGCTGACAGAGAGATTGAGATTGACAACGATCTGAAGCCGCTTCAGTTTTACTCGGTGGAGGATGGCGACAAAATCCTGGTGCGCTGGTCCTGATGAAACCACAGTGATTTGTGGGAAATATGAGTTTTATAGACTGAGCGTCACACTAATCCAAAAGATTTACCAGCTTCTGCACTGACCACCAAAACACATCACGGATCATAACAAGCAAATGAGAATATTCCCTGTTACTGGCCTCCATCATCTCCACATTTGTGTTTACAATTATAAAACTACACTTTAGTGGAAGAACTCAATACAGCATCGCCAAACTCTCAACTTTTAATACATAGTGCAGAGGTCACcaagggtttagctccaacttgcctcaacacacctgcctgggtgtgtcaagtatacctagtaagagcttgattagcttgatcaggtgtgtttgattagggttggagctaaaaggacaccggccctccaggaacaagtttggtgacccctaataTAGAGTATAACTGCATTATGTTTGTGGAAATCATTTCAGTCTGTCCCCACCAGGTGGAGCTGCA

Function

GO:

id name namespace
GO:0007021 tubulin complex assembly biological_process
GO:0007023 post-chaperonin tubulin folding pathway biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043014 alpha-tubulin binding molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-051030-120 Predicted to enable alpha-tubulin binding activity. Predicted to be involved in microtubule cytoskeleton organization; post-chaperonin tubulin folding pathway; and tubulin complex assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Kenny-Caffey syndrome type 1; hypoparathyroidism; and hypoparathyroidism-retardation-dysmorphism syndrome. Orthologous to human TBCE (tubulin folding cofactor E).

Ensembl:

ensembl_id ENSDART00000173366

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008880 lncRNA downstream 3226 44601861 ~ 44603625 (-) False XLOC_004395
TCONS_00008879 lncRNA downstream 3236 44601861 ~ 44603615 (-) False XLOC_004395
TCONS_00008881 lncRNA downstream 3236 44602244 ~ 44603615 (-) True XLOC_004395
TCONS_00008314 lncRNA downstream 76372 44529570 ~ 44530479 (-) True XLOC_004394
TCONS_00008878 lncRNA downstream 81921 44522806 ~ 44524930 (-) True XLOC_004393
TCONS_00008321 lncRNA upstream 3728 44617462 ~ 44619544 (-) False XLOC_004396
TCONS_00008322 lncRNA upstream 4877 44618611 ~ 44622240 (-) True XLOC_004396
TCONS_00008882 lncRNA upstream 103094 44716828 ~ 44722331 (-) True XLOC_004398
TCONS_00008325 lncRNA upstream 137201 44750935 ~ 44756483 (-) True XLOC_004399
TCONS_00008498 lncRNA upstream 184927 44798661 ~ 44801741 (-) True XLOC_004400
TCONS_00008313 mRNA downstream 63769 44526892 ~ 44543082 (-) False XLOC_004394
TCONS_00008312 mRNA downstream 107844 44495858 ~ 44499007 (-) True XLOC_004392
TCONS_00008311 mRNA downstream 107876 44491762 ~ 44498975 (-) False XLOC_004392
TCONS_00008309 mRNA downstream 121089 44474371 ~ 44485762 (-) False XLOC_004391
TCONS_00008308 mRNA downstream 121151 44452261 ~ 44485700 (-) False XLOC_004391
TCONS_00008319 mRNA upstream 1333 44615067 ~ 44622250 (-) False XLOC_004396
TCONS_00008320 mRNA upstream 1484 44615218 ~ 44622240 (-) False XLOC_004396
TCONS_00008323 mRNA upstream 23782 44637516 ~ 44647286 (-) False XLOC_004397
TCONS_00008324 mRNA upstream 23782 44637516 ~ 44647315 (-) True XLOC_004397
TCONS_00008326 mRNA upstream 184322 44798056 ~ 44801968 (-) False XLOC_004400
TCONS_00008303 other downstream 267631 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 483393 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3231725 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 3522488 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 3910715 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008372 other upstream 817799 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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