XLOC_004397 (tomm20b)


Basic Information

Item Value
gene id XLOC_004397
gene name tomm20b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44637516 ~ 44647315 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008323
TGCAGTGGCTCTGATCGACGTGATTATTTGTAATTTTCCGGTGTTTTTGCTTGCGGTTCTGTGTGGGTTTCTCTCGTCATGATGGGCGGCAGCAGCAGCAGGATCGCGGCTGGTTTGGGCGCGGCGCTCTTCGTCGGTTACTGCATTTATTTCGACAGGAAGAGACGGAGTGACCCGAACTACAAGAACAAACTACGAGAACGAAGAAAAAAGCAGAAGGCAGCTCAGGAGAAAGCTGGATTATCAAGGttACCAGACCTGAAGGACGCAGAGGCGGTTCAGAAGTTTTTCCTGGAGGAGATTCAGCTGGGTGAAGAGCTGCTGGCTCAGGCGTATCGTCAGCGCTCAGAGCATCAGCGACGACGACATCGAGTAGCAGGAACTCCAGCCGCTGTACGACATCACTTCCTGTCTGTCCTGAATCTACAGTCCCGCCCCTTTTCCATTCACGAACAGCGAACGCACAGAAGCGGATCTAAAGCAGCATCTGAGGAGGGGAACAGAAGTGAGAGACATCAGTTTGGTGATGGTGTTTCAGTGCGTTTGAATGACAGAAGACAAGCATGACCCGCTAACACTCATCTATTTGAGTCATTTGATTTACTAACAGTGTTGAGTTTTGGAAGTCATTGAATATCGCGAAGGCTTGTAGACGCGatgtttacactgtctttagTCTGTGATGGGGAAATGGAGAAGTCATTTGTCTGTGTTCAtgtatttaagttatttttattggCTGTGAGACGTCTGATGTGGTGAAGCACGATTAAAGGTGCTCGgagtttcctctttttttaaaatccaaataAATCAATGTCGAATAA
>TCONS_00008324
CCTTCCTCGTGTGGCTCCGCTGAGGGTCATGCAGTGGCTCTGATCGACGTGATTATTTGTAATTTTCCGGTGTTTTTGCTTGCGGTTCTGTGTGGGTTTCTCTCGTCATGATGGGCGGCAGCAGCAGCAGGATCGCGGCTGGTTTGGGCGCGGCGCTCTTCGTCGGTTACTGCATTTATTTCGACAGGAAGAGACGGAGTGACCCGAACTACAAGAACAAACTACGAGAACGAAGAAAAAAGCAGAAGGCAGCTCAGGAGAAAGCTGGATTATCAAGGttACCAGACCTGAAGGACGCAGAGGCGGTTCAGAAGTTTTTCCTGGAGGAGATTCAGCTGGGTGAAGAGCTGCTGGCTCAGGgagacTATGAGAAAGGTGTGGATCACCTGACGAACGCCATCGCAGTGTGTGGTCAGCCTCAGCAGCTCCTGCAGGTCCTGCAGCAGACGCTCCCTCCTCCAGTCTTCCAGATGCTCCTCACCAAACTGCCCACCATCAGCCAgCGTATCGTCAGCGCTCAGAGCATCAGCGACGACGACATCGAGTAGCAGGAACTCCAGCCGCTGTACGACATCACTTCCTGTCTGTCCTGAATCTACAGTCCCGCCCCTTTTCCATTCACGAACAGCGAACGCACAGAAGCGGATCTAAAGCAGCATCTGAGGAGGGGAACAGAAGTGAGAGACATCAGTTTGGTGATGGTGTTTCAGTGCGTTTGAATGACAGAAGACAAGCATGACCCGCTAACACTCATCTATTTGAGTCATTTGATTTACTAACAGTGTTGAGTTTTGGAAGTCATTGAATATCGCGAAGGCTTGTAGACGCGatgtttacactgtctttagTCTGTGATGGGGAAATGGAGAAGTCATTTGTCTGTGTTCAtgtatttaagttatttttattggCTGTGAGACGTCTGATGTGGTGAAGCACGATTAAAGGTGCTCGgagtttcctctttttttaaaatccaaataAATCAATGTCGAATAA

Function

symbol description
tomm20b Predicted to enable mitochondrion targeting sequence binding activity. Predicted to contribute to protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix and tRNA import into mitochondrion. Predicted to act upstream of or within protein targeting. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Predicted to be integral component of mitochondrial outer membrane. Orthologous to human TOMM20 (translocase of outer mitochondrial membrane 20).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006605 protein targeting biological_process
GO:0030150 protein import into mitochondrial matrix biological_process
GO:0070096 mitochondrial outer membrane translocase complex assembly biological_process
GO:0015031 protein transport biological_process
GO:0016031 tRNA import into mitochondrion biological_process
GO:0005742 mitochondrial outer membrane translocase complex cellular_component
GO:0031307 integral component of mitochondrial outer membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0030943 mitochondrion targeting sequence binding molecular_function
GO:0008320 protein transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-451 Predicted to enable mitochondrion targeting sequence binding activity. Predicted to contribute to protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix and tRNA import into mitochondrion. Predicted to act upstream of or within protein targeting. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Predicted to be integral component of mitochondrial outer membrane. Orthologous to human TOMM20 (translocase of outer mitochondrial membrane 20).

Ensembl:

ensembl_id ENSDARG00000103566

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008323 False 827 mRNA 0.47 4 44637516 44647286
TCONS_00008324 True 999 mRNA 0.49 5 44637516 44647315

Neighbor

gene id symbol gene type direction distance location
XLOC_004396 tbce coding downstream 15038 44605727 ~ 44622478 (-)
XLOC_004395 NA coding downstream 33891 44601861 ~ 44603625 (-)
XLOC_004394 gpr137bb coding downstream 94434 44526892 ~ 44543082 (-)
XLOC_004393 NA coding downstream 112586 44522806 ~ 44524930 (-)
XLOC_004392 si:ch1073-365p7.2 coding downstream 138509 44491762 ~ 44499007 (-)
XLOC_004398 NA coding upstream 69513 44716828 ~ 44722331 (-)
XLOC_004399 BX569779.1 coding upstream 103620 44750935 ~ 44756483 (-)
XLOC_004400 map1lc3c coding upstream 150741 44798056 ~ 44801968 (-)
XLOC_004401 NA coding upstream 205267 44852582 ~ 44858601 (-)
XLOC_004402 opn6a coding upstream 211664 44858979 ~ 44876005 (-)
XLOC_004063 CR854846.1 misc downstream 28509838 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 31945825 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 32015749 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 32046220 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 32124254 12512966 ~ 12513262 (-)
XLOC_004390 NA non-coding downstream 185856 44451240 ~ 44451660 (-)
XLOC_004389 NA non-coding downstream 187167 44447695 ~ 44450349 (-)
XLOC_004387 NA non-coding downstream 251767 44384814 ~ 44385749 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_00331605_00336103 TOMM20 coding CI01000306 null 331329 ~ 336103 (-)