XLOC_004402 (opn6a)


Basic Information

Item Value
gene id XLOC_004402
gene name opn6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44858979 ~ 44876005 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008327
tcaaaattattagcttttaaatatttcccaagtgttgtttaatAGACATAagttattttcaacacatttctagacataatacttttaataactaaatcactgatttattttctctttgtcatgatgacagcacataatattagactagatattcttcaagacactagtgttcagcttaaagtgacatgtaaagccttcactagggtaattagggtaaagttagggtcattaggcaagtcattgtataacagtggtttgttctggagacaatccaacactaatattgctgaaggggcgaataatattgaccttaaaatgggtctaaaacaattaaaaactgcatttattctagctgaaataaaacaaataagactttcaccagcagaacaaacattagaggaaacactgtgaccAATTCCTGAAtctattcaacatcatttgggaaatattggaagaAGAATacaaattcacagaagggcgacttcaactatataaaataaactcaaCTGAAGCTGTTATATTCCTATATTACTGTAACacattactgtatataatatattatagttattattgatGGGCATGTCACACATTGGTCAGCCCTGTGgtatgtgtgtattgtgtgtctgATAGTATGTGCGCCTGTCTGACCGTGACCAGCAGAGATTATCCTGAAGCCGTCTGCTCTTTCCCAGATCCTCAACTCTTTAATCACAGATCCTATTAGTCCACAGTCTCCCAGTGAGCGGCCAGCACACCGTCAGAGAGTCCATATTGCTGAACACACTGTAGTCACACCTGTAGTCACGCAGGTCTGTAGGCTATATATGGATTATCCCGCGTCAGTCGCGTCAGTCTCTCCGCTCAACAGCGGTAGTTTAATAATCCTCTCAGCGGGAGCAGCAGCACCGAACGCCGGTGGAGGATCGTGATTTCTGCCGGTGTGAGTGCTCAGAGACCGGCATGTCCGCGCAAAACCCGCTTCAGGTGGTCAACATCCCCTGGAGGAACAACAACTTTAGCCTGATGAGCCGCGATCCGCCGCTGTCCGATCAGGGGGAGACCATCATCGGTGTATACCTGCTCATACTCGgctggttgTCGTGGTTTGGGAACAGTATCGTGATCTTCGTGCTCTTCAGGCAGCGCTCCACTCTTCAGCCCACTGATTACCTGACTCTGAATCTGGCTGTTTCTGACGCCAGCATCTCGGTGTTCGGATACTCGCGCGGCATCTTGGAGATCTTCAACATCTTCAAGGACAGCGGCTACATCATCTCCTCTGTCTGGACGTGCCAGgtggaCGGGTTCTTCACGCTGGTGTTTGGTCTGAGCAGCATCAACACACTGACGGTGATCAGCATCACACGCTTCATCAAAGGCTGCCACCCTCATAAAGCTCACTGCATCACCAACTCCACTGTTGCGGTGTGTGTGGTCTTTATTTGGATCGGTGCGTTCTTCTGGTCGGCGGCGCCTGTTCTTGGATGGGGAAGCTACACCGACCGCGGTTACGGCACGTGTGAGATCGACTGGGTGAAGGCGAATTACTCCACCATCCACAAGTCCTACATCATCTCCATCTTCATCTTCTGCTTCCTGGTGCCGGTGCTGCTGATGCTCTTCTGTTACATCTCCATCATCAACACGGTGAAGAGAGGAAACGCCATGAATGCGGACGGAGACCTGAGCGACCGTCAGAGGAAGATCGAGAGAGACGTCACCATTgtgTCGATCGTGATCTGCACCGCCTTCATCTTGGCCTGGTCCCCGTACGCTGTGGTCTCCATGTGGTCCGCCTGGGGTTTCCACGTCCCCAACCTGACCAGCATCTTCACGCGACTCTTCGCCAAGTCTGCTAGCTTCTACAACCCGCTCATCTACTTCGGCCTGAGCTCCAAGTTCCGCAAGGATGTGAGTGTGTTGCTGCCCTGCGGTCGTGAAGGCCGAGACCCGGTGCGTCTGAAGCGCTTCAAGCGTCTGCGGGGCCGAGCGGAGCCGCCCGGGGCCCCGGCGCACACACCGCACCCGCAGATCGCACTCAAAAACTACAACAACCACAGCAAACCACACGCTGGCCCCGCCCACTGCACTGGACACGCCCCCAGCCCAGACTCAGGAGTGGGCAGTCATCATGAGACTCCGCCCCCTCAGCCCCGCCCACAGCTGTTCTTTATTGACGTTCCAGAGCCGGAGGCGGAGTCAGAGTGTGTGCGGCTCTGAGATGGTTGCACACAGATGACCTGTTTTTACAAATGtgagtggattgaacttaaagcAGTTCAGTCGTCCAACCCAAAAACTCAAGaactgtttcagctcattttaaatgtcatgttttgagtgtttaatgctgtgttcacaccagacgcggtacGCGCGGATAAATCATGCTATTTGCGCGTAGACGCCTGAACAgattgagtttactcgcttcattcacacgtcaaattcactgagcaatagacGAGCTTTCGCATCATGGCCAGGGCTACTATCTGCTTGGAGAAGTTCAGATTTTAACAACTCGAGCAATTCGTGGGAAACGCTCAACTCGCGCCGCTTCATTTgtgcgtatcgcgccgcaggatgtctgttcgcgtctttgcattgacttaacgtaaatcactcgcgctcgccgcttcttccgcgtctggtgtgatcGCAGCATAATAAAGACGCTTTgtgcttttcctgcagttttttgtttttctcttaaACACTGTTGgagatgtgtgaacataaactgatttatttcttttaaaaatattttcttttaaaaaagctttaaatgttCTGCCTTACGTTTTTCTTTCTTCATTAAACCTGGTTTTTCTGCTCTGCCCAATTTTAGTTTCAGGTAAAATCcagattttttctcttttcactttttaatttcataaattctttttttcttattttaaatatagaattgacacttttttttattcaaaaaaattgTGTTTCCTCTATAAAACACGTCTCTTTTCATTGTCAAACATCTTTTACTTTCTTTGttctttaaaatagttttctttctacatttttcttaaaaaaaaaaaaaaaaaaaacctgaaaaacccTGTTGCTCTTGGAGAATGATGTATTTCTGTACATTGTCATAAAAATACTCTTCTGCcaatttctctaatatttacccttaaaaaaaaagtttcatctggtttagttttttattaatttctcttaactttttcattttaagtaaattttcCATGAAAACATTTtccttttcctttattttctCTACATTTCCCCCATTTAACAATCCCTCGTCTTTCAGTACGGTTCTGTCTTCCTGTTATTTAAATCTGTCTTAATTATATTTCTCCTCAttttttcattcttcaaaacattttcatCTTCAAAAACAGCCgtcttattttactttttgtttttcaaaaatcttttttctcttcaaaaatactttgtttctttattttcctcaacaacaacaacaaaacaacacgatgtgtgtgtgttctgttcccgtgtacgtatgtgtgtgtgtgtgtgatcaaagCTGCATTTGATCAGAAAAACTGTatataaattgtgaaatattacagtGTACAATAGCTGATTTCTGTGtgtaaatgtcattataatgttgAGTGGTGTCATTTATTCTTGTGATGTGACGTTTCATTTTCAGCATCATCATACCCATTTATTGCTCATAAAATCTctaaattatttgtaaaatgaTCATGCAAATTGTAGTTTCATAATTTGGATTTTTTAGGTTTATTATGTGTGTTTTAGAAACAAATATTCTTCTGTTATTATGTAAAAACATTTATTCCCAATtcctcaaataaaaatattgtgattTAGAGAATCTAATATTGTTTGTGTGTCAgaacaattaatattttaactgAAAAAAAGCATTATTCCAGCAAATATTTAATTCTGAAGTTCAGTAACAGGTATTAtgttaaacaacaacaatacaaacatgtctgaaaacacggcttttttgttattttgagcacaaaaaacactgtcattagtgtcattatttacttaataCATTGTGTAAGTAATAGATAATATTATATAAGTATACAAAGCCATCTCTCTCTGAATCAGTATACTTTAGTTGTAGTGATATGAACGCTTTAGCGCCCTCGAGCGGCTGCTTTGAGCTACTGCAGCACAAATAACGCTATTAATATACTGTACAGCATAAGTTATTAGTTTATCAAAGACAGCATGTCAAAGATGGTCTGTTCATTTTTCCAGTGAAGAGATCCATGTCAGCCATGAaccctttaaaaatacacaaGTTTGTAAATGTTAAATGCTGAGTGCATAGTTAGGGTTTTACTATACTACACCACTGTTTAACATTACACTTCTGAGCTTACATCTTACAAACTGACTTATTTTATAGTGAAATGTCGAGTTTATGTTACAACTCTGACTTAAAATAAAGACTTATATCTTaacattttaagctatttttaaatcaattctgAGCTTTTGTCTCACAAGTCAGCTTTTTGTCTCTCAGAATTGTTTAAACAATTctgcgataaaaaaaaaaaaaagagttggaaGTTTTAGACAAAATTGAAATCACAGTTTAAAAAAGCACATTGGGAAACTCAGAATTACAATAAAAATTTTTCAGAATTTtgagacgtaaactcagaattacagtaaaaaaacagtctgaattatgagacgtaaactcagaattacagtaaaataagtctgaattatgagacgtaaactcagaattACTGTAAAAACAGTCTGAATTatgagacgtaaactcagaattACTGTAAAAACAGTCTGAATTatgagacgtaaactcagaattACTGTAAAATTAGTCTGAATTATGAGACATAAACTCAGAATTACTGTAAAAACAGTCTGAATTatgagacgtaaactcagaattacagtaaaataattctgaattatgagacgtaaactcagaattacagtaaaataattctgaattatgagacgtaaactcagaattac
>TCONS_00008328
CGCTCAACAGCGGTAGTTTAATAATCCTCTCAGCGGGAGCAGCAGCACCGAACGCCGGTGGAGGATCGTGATTTCTGCCGGTGTGAGTGCTCAGAGACCGGCATGTCCGCGCAAAACCCGCTTCAGGTGGTCAACATCCCCTGGAGGAACAACAACTTTAGCCTGATGAGCCGCGATCCGCCGCTGTCCGATCAGGGGGAGACCATCATCGGTGTATACCTGCTCATACTCGgctggttgTCGTGGTTTGGGAACAGTATCGTGATCTTCGTGCTCTTCAGGCAGCGCTCCACTCTTCAGCCCACTGATTACCTGACTCTGAATCTGGCTGTTTCTGACGCCAGCATCTCGGTGTTCGGATACTCGCGCGGCATCTTGGAGATCTTCAACATCTTCAAGGACAGCGGCTACATCATCTCCTCTGTCTGGACGTGCCAGgtggaCGGGTTCTTCACGCTGGTGTTTGGTCTGAGCAGCATCAACACACTGACGGTGATCAGCATCACACGCTTCATCAAAGGCTGCCACCCTCATAAAGCTCACTGCATCACCAACTCCACTGTTGCGGTGTGTGTGGTCTTTATTTGGATCGGTGCGTTCTTCTGGTCGGCGGCGCCTGTTCTTGGATGGGGAAGCTACACCGACCGCGGTTACGGCACGTGTGAGATCGACTGGGTGAAGGCGAATTACTCCACCATCCACAAGTCCTACATCATCTCCATCTTCATCTTCTGCTTCCTGGTGCCGGTGCTGCTGATGCTCTTCTGTTACATCTCCATCATCAACACGGTGAAGAGAGGAAACGCCATGAATGCGGACGGAGACCTGAGCGACCGTCAGAGGAAGATCGAGAGAGACGTCACCATTgtgTCGATCGTGATCTGCACCGCCTTCATCTTGGCCTGGTCCCCGTACGCTGTGGTCTCCATGTGGTCCGCCTGGGGTTTCCACGTCCCCAACCTGACCAGCATCTTCACGCGACTCTTCGCCAAGTCTGCTAGCTTCTACAACCCGCTCATCTACTTCGGCCTGAGCTCCAAGTTCCGCAAGGATGTGAGTGTGTTGCTGCCCTGCGGTCGTGAAGGCCGAGACCCGGTGCGTCTGAAGCGCTTCAAGCGTCTGCGGGGCCGAGCGGAGCCGCCCGGGGCCCCGGCGCACACACCGCACCCGCAGATCGCACTCAAAAACTACAACAACCACAGCAAACCACACGCTGGCCCCGCCCACTGCACTGGACACGCCCCCAGCCCAGACTCAGGAGTGGGCAGTCATCATGAGACTCCGCCCCCTCAGCCCCGCCCACAGCTGTTCTTTATTGACGTTCCAGAGCCGGAGGCGGAGTCAGAGTGTGTGCGGCTCTGAGATGGTTGCACACAGATGACCTGTTTTTACAAATGtgagtggattgaacttaaagcAGTTCAGTCGTCCAACCCAAAAACTCAAGaactgtttcagctcattttaaatgtcatgttttgagtgtttaatgctgtgttcacaccagacgcggtacGCGCGGATAAATCATGCTATTTGCGCGTAGACGCCTGAACAgattgagtttactcgcttcattcacacgtcaaattcactgagcaatagacGAGCTTTCGCATCATGGCCAGGGCTACTATCTGCTTGGAGAAGTTCAGATTTTAACAACTCGAGCAATTCGTGGGAAACGCTCAACTCGCGCCGCTTCATTTgtgcgtatcgcgccgcaggatgtctgttcgcgtctttgcattgacttaacgtaaatcactcgcgctcgccgcttcttccgcgtctggtgtgatcGCAGCATAATAAAGACGCTTTgtgcttttcctgcagttttttgtttttctcttaaACACTGTTGgagatgtgtgaacataaactgatttatttcttttaaaaatattttcttttaaaaaagctttaaatgttCTGCCTTACGTTTTTCTTTCTTCATTAAACCTGGTTTTTCTGCTCTGCCCAATTTTAGTTTCAGGTAAAATCcagattttttctcttttcactttttaatttcataaattctttttttcttattttaaatatagaattgacacttttttttattcaaaaaaattgTGTTTCCTCTATAAAACACGTCTCTTTTCATTGTCAAACATCTTTTACTTTCTTTGttctttaaaatagttttctttctacatttttctt

Function

symbol description
opn6a Predicted to enable G protein-coupled photoreceptor activity. Acts upstream of or within phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; heart; integument; and testis.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007602 phototransduction biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061201-30 Predicted to enable G protein-coupled photoreceptor activity. Acts upstream of or within phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; heart; integument; and testis.

Ensembl:

ensembl_id ENSDARG00000102430

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008327 False 5019 mRNA 0.39 7 44858979 44876005
TCONS_00008328 True 2190 mRNA 0.50 6 44860950 44873780

Neighbor

gene id symbol gene type direction distance location
XLOC_004401 NA coding downstream 378 44852582 ~ 44858601 (-)
XLOC_004400 map1lc3c coding downstream 57011 44798056 ~ 44801968 (-)
XLOC_004399 BX569779.1 coding downstream 102496 44750935 ~ 44756483 (-)
XLOC_004398 NA coding downstream 136648 44716828 ~ 44722331 (-)
XLOC_004397 tomm20b coding downstream 211664 44637516 ~ 44647315 (-)
XLOC_004403 eif4a3 coding upstream 2566 44878571 ~ 44898129 (-)
XLOC_004404 zgc:171772 coding upstream 22709 44898714 ~ 44906703 (-)
XLOC_004405 pfklb coding upstream 34610 44910615 ~ 44931962 (-)
XLOC_004406 orc2 coding upstream 61200 44937205 ~ 44945636 (-)
XLOC_004407 ldb1b coding upstream 77593 44953598 ~ 44999858 (-)
XLOC_004063 CR854846.1 misc downstream 28731301 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 32167288 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 32237212 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 32267683 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 32345717 12512966 ~ 12513262 (-)
XLOC_004395 NA non-coding downstream 255354 44601861 ~ 44603625 (-)
XLOC_004393 NA non-coding downstream 334049 44522806 ~ 44524930 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_00466878_00474566 NA coding CI01000306 null 466713 ~ 474566 (-)
bowfin (Amia calva) AMCG00001609 NA coding CM030143.1 CM030143.1 8671010 ~ 8686429 (-)