Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_004400 |
| gene name | map1lc3c |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 44798056 ~ 44801968 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| map1lc3c | Predicted to enable microtubule binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in autophagy of mitochondrion; cellular response to nitrogen starvation; and macroautophagy. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Orthologous to human MAP1LC3C (microtubule associated protein 1 light chain 3 gamma). |
| id | name | namespace |
|---|---|---|
| GO:0006914 | autophagy | biological_process |
| GO:0000045 | autophagosome assembly | biological_process |
| GO:0097352 | autophagosome maturation | biological_process |
| GO:0006995 | cellular response to nitrogen starvation | biological_process |
| GO:0000422 | autophagy of mitochondrion | biological_process |
| GO:0016236 | macroautophagy | biological_process |
| GO:0005776 | autophagosome | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0000421 | autophagosome membrane | cellular_component |
| GO:0031625 | ubiquitin protein ligase binding | molecular_function |
| GO:0008017 | microtubule binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1080 | Predicted to enable microtubule binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in autophagy of mitochondrion; cellular response to nitrogen starvation; and macroautophagy. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Orthologous to human MAP1LC3C (microtubule associated protein 1 light chain 3 gamma). |
| ensembl_id | ENSDARG00000100528 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00008326 | False | 1068 | mRNA | 0.40 | 4 | 44798056 | 44801968 |
| TCONS_00008498 | True | 336 | lncRNA | 0.49 | 3 | 44798661 | 44801741 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_004399 | BX569779.1 | coding | downstream | 41573 | 44750935 ~ 44756483 (-) |
| XLOC_004398 | NA | coding | downstream | 75725 | 44716828 ~ 44722331 (-) |
| XLOC_004397 | tomm20b | coding | downstream | 150741 | 44637516 ~ 44647315 (-) |
| XLOC_004396 | tbce | coding | downstream | 175578 | 44605727 ~ 44622478 (-) |
| XLOC_004395 | NA | coding | downstream | 194431 | 44601861 ~ 44603625 (-) |
| XLOC_004401 | NA | coding | upstream | 50614 | 44852582 ~ 44858601 (-) |
| XLOC_004402 | opn6a | coding | upstream | 57011 | 44858979 ~ 44876005 (-) |
| XLOC_004403 | eif4a3 | coding | upstream | 76603 | 44878571 ~ 44898129 (-) |
| XLOC_004404 | zgc:171772 | coding | upstream | 96746 | 44898714 ~ 44906703 (-) |
| XLOC_004405 | pfklb | coding | upstream | 108647 | 44910615 ~ 44931962 (-) |
| XLOC_004063 | CR854846.1 | misc | downstream | 28670378 | 16127382 ~ 16127678 (-) |
| XLOC_004019 | CR450764.8 | misc | downstream | 32106365 | 12691395 ~ 12691691 (-) |
| XLOC_004015 | CR450764.4 | misc | downstream | 32176289 | 12621518 ~ 12621767 (-) |
| XLOC_004013 | CABZ01022569.1 | misc | downstream | 32206760 | 12590999 ~ 12591296 (-) |
| XLOC_004008 | BX000700.19 | misc | downstream | 32284794 | 12512966 ~ 12513262 (-) |
| XLOC_004393 | NA | non-coding | downstream | 273126 | 44522806 ~ 44524930 (-) |
| XLOC_004390 | NA | non-coding | downstream | 346396 | 44451240 ~ 44451660 (-) |
