RNA id: TCONS_00008326


Basic Information

Item Value
RNA id TCONS_00008326
length 1068
RNA type mRNA
GC content 0.40
exon number 4
gene id XLOC_004400
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44798056 ~ 44801968 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGTGACGTCACCGCCGGCGCAGTATTTAATTAGTGTTAGTGCGCTCGGAGAGCAATTAGTGCGCAGGTCAGAGGTGCAGCTCAACATGCCTCCGTTTGAGAAAACTCCACATCCCAAACCCTTCAAACAGAGGAAGAGCTTAGCAACGAGGAAACAAGAGGTGGCGGGAATACGGACTAAGTTTCCGACTAAAATCCCGGTAATAATCGAGCGATATCAGAGAGAGAAGTTTTTGCCGCCTCTGGATAAAACCAAGTTCCTCGTGCCTCAGGAGCTCACCATGACCCAGTTCGTCACCATCATCAGGAATCGGATGACGCTGATGCCCAATCAGGCCTTTTACCTGCTCATCAATAACTCTGGCATCGCCAGCATGTCTATGACCATGGCGCAGCTTTATAAAGACCACAAAGATGAAGACGGGTTTCTCTACATGACCTACGCCTCGCAGGAGATGTTCGGACACAGGTGACGCGTCCAGGACAtttactgaactgaactgatgcATTATTTAAGTCTTTGTATATAGTGTTATCCTTTTAGctactgtgtgtgttttaatggtTTTCTAAGTAATAAACTGTCTTTAATTGGCGTATCGGCCACCAGAGGGAGACGTCTGTTCATTCTGATGCAGGAAATAAATGTTCTCGCTCGTTTAGGAATAATAAAAGCCTAAATCAtgtgcatataaaaaaaaaataaaggttgaTCATGTTTGGTGCATCGTTTTGGGTTCATGTTTGGATTATGCAGCTCAAATATATGGGGGATTTTTAGCATTGTCTGTATATTTTGTCTCCTGAATAaacttgtttattaaaaaagCTTTAATGAAACTGTTTTGAATAAAAGGTCTTAAGGTTTTCCTAAAATATAATGTTTGCATGTgtaataactaggcccacacggaatctgtgcgcgcagaattctgcagatttttagtccatcattaattctttatttacttgagtaaatctaaatttctttagttgtttaatcaattacagtaatattgactaatatgaaaatgctcatctgatttatgtacaatgcaatgcagttt

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0000045 autophagosome assembly biological_process
GO:0097352 autophagosome maturation biological_process
GO:0006995 cellular response to nitrogen starvation biological_process
GO:0000422 autophagy of mitochondrion biological_process
GO:0016236 macroautophagy biological_process
GO:0005776 autophagosome cellular_component
GO:0005829 cytosol cellular_component
GO:0000421 autophagosome membrane cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1080 Predicted to enable microtubule binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in autophagy of mitochondrion; cellular response to nitrogen starvation; and macroautophagy. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Orthologous to human MAP1LC3C (microtubule associated protein 1 light chain 3 gamma).

Ensembl:

ensembl_id ENSDART00000161846

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008325 lncRNA downstream 41573 44750935 ~ 44756483 (-) True XLOC_004399
TCONS_00008882 lncRNA downstream 75725 44716828 ~ 44722331 (-) True XLOC_004398
TCONS_00008322 lncRNA downstream 175816 44618611 ~ 44622240 (-) True XLOC_004396
TCONS_00008321 lncRNA downstream 178512 44617462 ~ 44619544 (-) False XLOC_004396
TCONS_00008318 lncRNA downstream 180923 44613502 ~ 44617133 (-) False XLOC_004396
TCONS_00008883 lncRNA upstream 50614 44852582 ~ 44858601 (-) True XLOC_004401
TCONS_00008499 lncRNA upstream 78857 44880825 ~ 44889032 (-) False XLOC_004403
TCONS_00008500 lncRNA upstream 87080 44889048 ~ 44893409 (-) True XLOC_004403
TCONS_00008501 lncRNA upstream 99335 44901303 ~ 44904326 (-) True XLOC_004404
TCONS_00008347 lncRNA upstream 341529 45143497 ~ 45148912 (-) False XLOC_004408
TCONS_00008324 mRNA downstream 150741 44637516 ~ 44647315 (-) True XLOC_004397
TCONS_00008323 mRNA downstream 150770 44637516 ~ 44647286 (-) False XLOC_004397
TCONS_00008316 mRNA downstream 175578 44606545 ~ 44622478 (-) False XLOC_004396
TCONS_00008319 mRNA downstream 175806 44615067 ~ 44622250 (-) False XLOC_004396
TCONS_00008320 mRNA downstream 175816 44615218 ~ 44622240 (-) False XLOC_004396
TCONS_00008327 mRNA upstream 57011 44858979 ~ 44876005 (-) False XLOC_004402
TCONS_00008328 mRNA upstream 58982 44860950 ~ 44873780 (-) True XLOC_004402
TCONS_00008329 mRNA upstream 76603 44878571 ~ 44898129 (-) False XLOC_004403
TCONS_00008330 mRNA upstream 96746 44898714 ~ 44906703 (-) False XLOC_004404
TCONS_00008331 mRNA upstream 108647 44910615 ~ 44931962 (-) True XLOC_004405
TCONS_00008317 other downstream 184322 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008303 other downstream 458836 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 674598 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3422930 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 3713693 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008372 other upstream 629565 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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