RNA id: TCONS_00008331


Basic Information

Item Value
RNA id TCONS_00008331
length 2340
RNA type mRNA
GC content 0.57
exon number 22
gene id XLOC_004405
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44910615 ~ 44931962 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCATGTGGACTTTGAGAAGCTGCGGATGAGCGGCGCTGGAAAAGCCATCGCCGTGCTGACGAGCGGCGGGGACGCGCAGGGTATGAATGCTGCGGTTCGCGCTGTAACACGCATGGGCATTTTTGTGGGCGCTAAAGTCTACCTGATATATGAGgGTTATCAAGGCCTGGTGGACGGAGGAGATCACATCAAACTGGCGAACTGGCAGACCGTCACCAACATCATCCAGCTGggtggCACCATCATTGGCAGTGCCCGCTGTAAGGCCTTCACCACACACGAGGGTCGTCTGGCGGCGGCGTTTCACCTGCTGCAGCGCGGCATCaccaacctgtgtgtgtgtggaggagaCGGCAGCCTGACCGGAGCCAACACCTTCCGCAGCGAGTGGAGCGGCCTACTGGAGGAGCTCGTACAGcaggggcgCATCACGGCCTCTCTGGCGCAGCAGCACACACACCTGAACATCGTGGGTCTGGTGGGCTCCATTGATAATGATTTCTGTGGGACGGACATGACCATCGGGGCGGACTCTGCTCTACACAGGATCATGGAAGTGATTGATGCCATCAGCACCACTGCAcagagtcatCAGAGGACGTTTGTGCTGGAGGTGATGGGCCGACACTGCGGGTATCTGGCGGTGGTCTCGGCTCTGGCGTCTGGTGCTGATTGGCTGTTCATCCCGGAGGCTCCACCAGAGGACGGATGGGAAGATCACATGTGCGCTCGGCTGGGGGAGgttcgCAGTAAGGGGTCGCGTCTGAACATCGTGATCATCGCAGAAGGAGCGATTGATAAACAAGGGCAGCTCATCTCCTCCAGCTACGTCAAAGATctggtGGTTCAGCGGCTGGGTTATGACACGCGGGTCACCGTCCTTGGGCACGTGCAGAGAGGAGGAACACCGTCCGCCTTCGACAGAGTCCTGaGCAGTAAGATGGGTGTCGAGGCTGTGGTTGCGCTGCTGGAAGCGACTCCAGAAACGTCGGCATGTGTGATCGGCCTGTCGGGGAATCACGCCATGCGTCTGCCGCTCATGGAGTGTGTGAACATGactaAAGAGGTGCAGAAGGCTATGAATGAGAAGAGGTTTGAGGAGGCCATTCAGCTGCGGGGAAAGAGTTTCGAGAACAACTGGAACACGTACAAGCTTCTAGCTCACCAGAAACCGGCTCTGTCAAAGAGTAATCACTCGATGGCGATTCTGAATATCGGCGCTCCGGCCGCAGGGATGAACGCCGCCGTCAGGTCAGCTGTTCGAGTCGGACTCGCTCACGGACACAGAGTTTACACTGTTCATGACGGGTTCGAGGGGCTCGCTAAAGGCAtgGTGACGGAGGTGCATTGGCATGATGTGGCAGGATGGACGGGTCAGGGCGGATCACTGCTGGGCACCAAACGAACTCTTCCAAACTCCTGCATGGAGAGCATCGTGGACAACATCAGCAAATACGACATCCAGAGTCTGCTGGTCATCGGCGGATTTGAGgcgtaTGAAGGAGTCCTCCAGCTGGTAGAGGCTCGCGGCCGCTATGACGAGCTCTGCATCTGCATGTGTGTCATTCCTGCCACCATCAGCAACAATGTGCCGGGCACAGACTTCAGCCTGGGGGCAGATACTGCGGTAAACGCCGCCATGGAGAGCTGTGATAAAATCAAGCAGTCTGCATCAGGAACCAAACGCCGCGTCTTCATAGTGGAGACCATGGGGGGATTCTGCGGGTATCTGGCAACCACTACAGGCATCGCTGTGGGAGCGGACGCGGTGTACATCTATGAGGAGCCGTTCAACATTCACGACCTTGAGACAAATGTGGAGCATCTGACGGACAAAATGAAGAATGATATTCAGAGGGGACTAGTGTTGAggaaTGAGAAGTGTCATAAGCACTACACCACAGACTTCATCCATAACCTGTACTCTGCTGAGGGCCAAGGAGTGTTCGACTGCAGGGTCAATGTGCTGGGTCACCTGCAGCAGGGTGGCGTCCCCACTCCATTCGACAGGAACTTCGGCACTAAGCTGGGAGTGAAGGCGGTTCAGTGGCTGACGGAGCACATGAGCGCCACCTACAGACAGGGCCGTGTGTTTGCAAACGCTCCCGATACGGCATGTGTGATTGGCATGAAGAAGAAAGTGATGTCCTTCAGCCCCGTCACTGAGCTCAAGGAACACACAGACTTTGAGCACAGGATGCCGAAGGAGCAGTGGTGGCTGAACCTGCGGCCCATGCAGAAGATGTTGGCCAAATATCAGACCAGTTTCGACGAATACGTGACCGGAGAGATCGAACATGTGACCCGTCGAACCCTTAGCATCGAGACGGGCTTTTAG

Function

GO:

id name namespace
GO:0030388 fructose 1,6-bisphosphate metabolic process biological_process
GO:0008152 metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0051289 protein homotetramerization biological_process
GO:0016310 phosphorylation biological_process
GO:0006002 fructose 6-phosphate metabolic process biological_process
GO:0006007 glucose catabolic process biological_process
GO:0061621 canonical glycolysis biological_process
GO:0005945 6-phosphofructokinase complex cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003872 6-phosphofructokinase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0016208 AMP binding molecular_function
GO:0070095 fructose-6-phosphate binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0048029 monosaccharide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-62 Predicted to enable several functions, including 6-phosphofructokinase activity; anion binding activity; and identical protein binding activity. Predicted to be involved in canonical glycolysis; fructose 1,6-bisphosphate metabolic process; and fructose 6-phosphate metabolic process. Predicted to act upstream of or within glycolytic process. Predicted to be located in cytoplasm. Predicted to be part of 6-phosphofructokinase complex. Predicted to be active in membrane. Is expressed in liver; male organism; nervous system; somite; and yolk syncytial layer. Orthologous to human PFKL (phosphofructokinase, liver type).

Ensembl:

ensembl_id ENSDART00000170345

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008501 lncRNA downstream 6289 44901303 ~ 44904326 (-) True XLOC_004404
TCONS_00008500 lncRNA downstream 17206 44889048 ~ 44893409 (-) True XLOC_004403
TCONS_00008499 lncRNA downstream 21583 44880825 ~ 44889032 (-) False XLOC_004403
TCONS_00008883 lncRNA downstream 52014 44852582 ~ 44858601 (-) True XLOC_004401
TCONS_00008498 lncRNA downstream 108874 44798661 ~ 44801741 (-) True XLOC_004400
TCONS_00008347 lncRNA upstream 211535 45143497 ~ 45148912 (-) False XLOC_004408
TCONS_00008348 lncRNA upstream 215224 45147186 ~ 45148912 (-) True XLOC_004408
TCONS_00008356 lncRNA upstream 274505 45206467 ~ 45207039 (-) True XLOC_004412
TCONS_00008360 lncRNA upstream 427150 45359112 ~ 45359656 (-) False XLOC_004414
TCONS_00008330 mRNA downstream 3912 44898714 ~ 44906703 (-) False XLOC_004404
TCONS_00008329 mRNA downstream 12486 44878571 ~ 44898129 (-) False XLOC_004403
TCONS_00008327 mRNA downstream 34610 44858979 ~ 44876005 (-) False XLOC_004402
TCONS_00008328 mRNA downstream 36835 44860950 ~ 44873780 (-) True XLOC_004402
TCONS_00008326 mRNA downstream 108647 44798056 ~ 44801968 (-) False XLOC_004400
TCONS_00008332 mRNA upstream 5243 44937205 ~ 44945636 (-) True XLOC_004406
TCONS_00008333 mRNA upstream 21636 44953598 ~ 44979281 (-) False XLOC_004407
TCONS_00008335 mRNA upstream 21969 44953931 ~ 44999858 (-) False XLOC_004407
TCONS_00008334 mRNA upstream 21969 44953931 ~ 44999858 (-) True XLOC_004407
TCONS_00008336 mRNA upstream 190185 45122147 ~ 45140227 (-) False XLOC_004408
TCONS_00008317 other downstream 296881 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008303 other downstream 571395 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 787157 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3535489 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 3826252 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008372 other upstream 499571 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_00482506_00494090.mRNA False 2073 mRNA 0.55 19 CI01000306 482482 ~ 494090 (-)
bowfin (Amia calva) AMCG00001199 True 3761 mRNA 0.50 22 CM030137.1 18564758 ~ 18588835 (-)