Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00008335 |
| length | 1236 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 11 |
| gene id | XLOC_004407 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 44953598 ~ 44999858 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003712 | transcription coregulator activity | molecular_function |
| GO:0030274 | LIM domain binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990415-135 | Predicted to enable LIM domain binding activity and transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in blood island; fin bud; lateral mesoderm; neural tube; and tail bud. |
| ensembl_id | ENSDART00000167759 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008501 | lncRNA | downstream | 49605 | 44901303 ~ 44904326 (-) | True | XLOC_004404 |
| TCONS_00008500 | lncRNA | downstream | 60522 | 44889048 ~ 44893409 (-) | True | XLOC_004403 |
| TCONS_00008499 | lncRNA | downstream | 64899 | 44880825 ~ 44889032 (-) | False | XLOC_004403 |
| TCONS_00008883 | lncRNA | downstream | 95330 | 44852582 ~ 44858601 (-) | True | XLOC_004401 |
| TCONS_00008498 | lncRNA | downstream | 152190 | 44798661 ~ 44801741 (-) | True | XLOC_004400 |
| TCONS_00008347 | lncRNA | upstream | 143639 | 45143497 ~ 45148912 (-) | False | XLOC_004408 |
| TCONS_00008348 | lncRNA | upstream | 147328 | 45147186 ~ 45148912 (-) | True | XLOC_004408 |
| TCONS_00008356 | lncRNA | upstream | 206609 | 45206467 ~ 45207039 (-) | True | XLOC_004412 |
| TCONS_00008360 | lncRNA | upstream | 359254 | 45359112 ~ 45359656 (-) | False | XLOC_004414 |
| TCONS_00008332 | mRNA | downstream | 8295 | 44937205 ~ 44945636 (-) | True | XLOC_004406 |
| TCONS_00008331 | mRNA | downstream | 21969 | 44910615 ~ 44931962 (-) | True | XLOC_004405 |
| TCONS_00008330 | mRNA | downstream | 47228 | 44898714 ~ 44906703 (-) | False | XLOC_004404 |
| TCONS_00008329 | mRNA | downstream | 55802 | 44878571 ~ 44898129 (-) | False | XLOC_004403 |
| TCONS_00008328 | mRNA | downstream | 80151 | 44860950 ~ 44873780 (-) | True | XLOC_004402 |
| TCONS_00008336 | mRNA | upstream | 122289 | 45122147 ~ 45140227 (-) | False | XLOC_004408 |
| TCONS_00008337 | mRNA | upstream | 122289 | 45122147 ~ 45141309 (-) | False | XLOC_004408 |
| TCONS_00008338 | mRNA | upstream | 126550 | 45126408 ~ 45138857 (-) | False | XLOC_004408 |
| TCONS_00008339 | mRNA | upstream | 127522 | 45127380 ~ 45135643 (-) | False | XLOC_004408 |
| TCONS_00008340 | mRNA | upstream | 129326 | 45129184 ~ 45148743 (-) | False | XLOC_004408 |
| TCONS_00008317 | other | downstream | 340197 | 44606851 ~ 44613734 (-) | False | XLOC_004396 |
| TCONS_00008303 | other | downstream | 614711 | 44337157 ~ 44339220 (-) | True | XLOC_004385 |
| TCONS_00008295 | other | downstream | 830473 | 44123327 ~ 44123458 (-) | True | XLOC_004381 |
| TCONS_00008250 | other | downstream | 3578805 | 41375011 ~ 41375126 (-) | True | XLOC_004339 |
| TCONS_00008244 | other | downstream | 3869568 | 41078191 ~ 41084363 (-) | True | XLOC_004334 |
| TCONS_00008372 | other | upstream | 431675 | 45431533 ~ 45435014 (-) | False | XLOC_004416 |
