XLOC_004416 (rfc4)


Basic Information

Item Value
gene id XLOC_004416
gene name rfc4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45426609 ~ 45435014 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008366
GGTGGTTCCTCCTAAAGTGATCCAGTCGCTCCTCCACATCTGCTATAAGGGCACGTTTGAGAAGCTGGAGGTTGCAGTGAAgGACATGATTGATCAGGGATACGCCGCTACTAATCTCCTCAACCAGCTACACGACGTCATCATCGAGGAGCAGCTGAGCGATAAGCAGAAGTCCGTCATCACTGAGAAGATGGCCgaagTGGACAAGTGTCTGGCAGACGGAGCAGACGAGTATCTGCAGCTGCTGAGTCTCTGCTCAGTCATCATGCAGCAGGCCACACAGAACACTTGATTCGCCAATCAGCTACTCTGACACACTTCTGACGACCAATCAGCTGCTCTGTCATCAGCATTGGTACTGATTTCACACAAAACTCCCCAAACTTTAGTTTTCaaccttattttgtacatttgaaGTTTGTAATTAAAAACTGTTTCTCA
>TCONS_00008367
ATGCAGGCGTTTCTGAAAGGTTCTTCCTCACAGAGTGTTAAAGCTCAGAagccttcatcatcatcatcctcggGTGGAGAGAAGAAGCAGAGAGCAGTGCCATGGGTGGAGAAATAcAGGCCCAAGTGTGTAGATGAAGTGGCGTTTCAGGAGGAGGTGGTGGCGGTGCTGAAGAAGTCTCTGGAAGGAGCAGACctgccGAATCTGCTGTTTTATGGGCCTCCAGGAACAGGAAAGACGTCCACCATCCTCGCTGCAGCCAGAGAGCTTTATGGgccgGATCTGTACCGCCAGCGAGTGCTAGAGCTGAATGCATCTGATGAGCGTGGGATTCAGGTGGTCCGAGAGAAGGTGAAGCGCTTCGCCCAGCTGACGGTGGCTGGCACACGACCAGAtggtaAGACCTGTCCACCATTTAAGATCATCATCCTGGACGAGGCGGACTCTATGACCAGCGCAGCGCAGGCAGCTCTCCGCCGCACCATGGAGAAGGAGTCACGCACCACACGCTTCTGCCTCATCTGTAACTATGTCAGCCGGATCATCGAGCCGCTGACCTCCAGGTGCTCAAAGTTCCGCTTCAAACCTTTGGCCAACGACGTCCAGCAGGAGAGAATACTGGAGATCTGCAGGAAAGAGAACCTCAAGTACACCACTGAGataataCAGTGTCTGAGACAAAAACAACagctggacatgacagcagcggcgacagcactacatAGTGTTATGCATATTAAGAGTGTACTGCATATTGTTGATATGACTCTGCTCTTCATTAGAGGGGTGGTTCCTCCTAAAGTGATCCAGTCGCTCCTCCACATCTGCTATAAGGGCACGTTTGAGAAGCTGGAGGTTGCAGTGAAgGACATGATTGATCAGGGATACGCCGCTACTAATCTCCTCAACCAGCTACACGACGTCATCATCGAGGAGCAGCTGAGCGATAAGCAGAAGTCCGTCATCACTGAGAAGATGGCCgaagTGGACAAGTGTCTGGCAGACGGAGCAGACGAGTATCTGCAGCTGCTGAGTCTCTGCTCAGTCATCATGCAGCAGGCCACACAGAACACTTGA
>TCONS_00008368
AGGAGTTTTATTCGagtttatttgaccaaaaaaagATTTATTGTGATTTACATCGATTATATTAAGGTGTTCAGCGTGTACAATCAAGACttgctgcagtgtttgtgaGCAGAGATGCAGGCGTTTCTGAAAGGTTCTTCCTCACAGAGTGTTAAAGCTCAGAagccttcatcatcatcatcctcggGTGGAGAGAAGAAGCAGAGAGCAGTGCCATGGGTGGAGAAATAcAGGCCCAAGTGTGTAGATGAAGTGGCGTTTCAGGAGGAGGTGGTGGCGGTGCTGAAGAAGTCTCTGGAAGGAGCAGACctgccGAATCTGCTGTTTTATGGGCCTCCAGGAACAGGAAAGACGTCCACCATCCTCGCTGCAGCCAGAGAGCTTTATGGgccgGATCTGTACCGCCAGCGAGTGCTAGAGCTGAATGCATCTGATGAGCGTGGGATTCAGGTGGTCCGAGAGAAGGTGAAGCGCTTCGCCCAGCTGACGGTGGCTGGCACACGACCAGAtggtaAGACCTGTCCACCATTTAAGATCATCATCCTGGACGAGGCGGACTCTATGACCAGCGCAGCGCAGGCAGCTCTCCGCCGCACCATGGAGAAGGAGTCACGCACCACACGCTTCTGCCTCATCTGTAACTATGTCAGCCGATTATCCCATGCAGAATGTGCTGCATACTTAAAAGCCTTCTTCCCCATGTCAGTCTGCACTTCAGGAacacacagtaaataaatatcctGATCATCGAGCCGCTGACCTCCAGGTGCTCAAAGTTCCGCTTCAAACCTTTGGCCAACGACGTCCAGCAGGAGAGAATACTGGAGATCTGCAGGAAAGAGAACCTCAAGTACACCACTGAGGTCTgtctgtacgtgtgtgtgtgtgtgtgtttgtgtttatataataCAGTGTCTGAGTGTGTTTGAGAATGTGTATAGGACAGTGTGTGCGAGagcgagtgtgtttgtgtataagagggtgtgtgtgcatatgagagTCTCtaatcctgctgccattggcccgatcaggccggtcctcctccagtcatcctcacTGTTGTTCCCACGACAAAAACAACagctggacatgacagcagcggcgacagcactacatatgACCCGAGCAGATCCTTAAGAGTGTTATGCATATTAAGAGTGTACTGCATATTGTTGATATGTTGAGTCCAAACTTTGTCACAAAAACTCTGGTTTGCATTAAataacttcccatcactactgtgtatctgtCCTCAGAAGCCTGTATATAGGCTGCTGTCTTGCGGGCTGTTGTGTTTAAATTTGAGGATGGTAGTGATAGATGGTAGTGTTCTTGTGTCAAACAAATGTAGTCTATCTTTGGTGGAGTTttattatgcaatatttattctgatgattttgaatcttgcacctaacaaacatccttatttagaaaaactaatagtaaaaatattaaaatctaaactaaaactaatcacttttaaaatatagaaactaatgtGAACTAGTTTACTAGTAATACTAATTAAAACgaagttaaaaataaaactaatgaaaaatccaaaactattataaccttggtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtg
>TCONS_00008369
CGCGTCTGGCGGGAATCTGAGGACCCGCGCAGTGTCAACAGATCGTCAGGAGTTTTATTCGagtttatttgaccaaaaaaagATTTATTGTGATTTACATCGATTATATTAAGgaGCAGAGATGCAGGCGTTTCTGAAAGGTTCTTCCTCACAGAGTGTTAAAGCTCAGAagccttcatcatcatcatcctcggGTGGAGAGAAGAAGCAGAGAGCAGTGCCATGGGTGGAGAAATAcAGGCCCAAGTGTGTAGATGAAGTGGCGTTTCAGGAGGAGGTGGTGGCGGTGCTGAAGAAGTCTCTGGAAGGAGCAGACctgccGAATCTGCTGTTTTATGGGCCTCCAGGAACAGGAAAGACGTCCACCATCCTCGCTGCAGCCAGAGAGCTTTATGGgccgGATCTGTACCGCCAGCGAGTGCTAGAGCTGAATGCATCTGATGAGCGTGGGATTCAGGTGGTCCGAGAGAAGGTGAAGCGCTTCGCCCAGCTGACGGTGGCTGGCACACGACCAGAtggtaAGACCTGTCCACCATTTAAGATCATCATCCTGGACGAGGCGGACTCTATGACCAGCGCAGCGCAGGCAGCTCTCCGCCGCACCATGGAGAAGGAGTCACGCACCACACGCTTCTGCCTCATCTGTAACTATGTCAGCCGGATCATCGAGCCGCTGACCTCCAGGTGCTCAAAGTTCCGCTTCAAACCTTTGGCCAACGACGTCCAGCAGGAGAGAATACTGGAGATCTGCAGGAAAGAGAACCTCAAGTACACCACTGAGGTCTgtctgtacgtgtgtgtgtgtgtgt
>TCONS_00008370
GTCACCTGCGCGTCTGGCGGGAATCTGAGGACCCGCGCAGTGTCAACAGATCGTCAGGAGTTTTATTCGagtttatttgaccaaaaaaagATTTATTGTGATTTACATCGATTATATTAAGAGATGCAGGCGTTTCTGAAAGGTTCTTCCTCACAGAGTGTTAAAGCTCAGAagccttcatcatcatcatcctcggGTGGAGAGAAGAAGCAGAGAGCAGTGCCATGGGTGGAGAAATAcAGGCCCAAGTGTGTAGATGAAGTGGCGTTTCAGGAGGAGGTGGTGGCGGTGCTGAAGAAGTCTCTGGAAGGAGCAGACctgccGAATCTGCTGTTTTATGGGCCTCCAGGAACAGGAAAGACGTCCACCATCCTCGCTGCAGCCAGAGAGCTTTATGGgccgGATCTGTACCGCCAGCGAGTGCTAGAGCTGAATGCATCTGATGAGCGTGGGATTCAGGTGGTCCGAGAGAAGGTGAAGCGCTTCGCCCAGCTGACGGTGGCTGGCACACGACCAGAtggtaAGACCTGTCCACCATTTAAGATCATCATCCTGGACGAGGCGGACTCTATGACCAGCGCAGCGCAGGCAGCTCTCCGCCGCACCATGGAGAAGGAGTCACGCACCACACGCTTCTGCCTCATCTGTAACTATGTCAGCCGGATCATCGAGCCGCTGACCTCCAGGTGCTCAAAGTTCCGCTTCAAACCTTTGGCCAACGACGTCCAGCAGGAGAGAATACTGGAGATCTGCAGGAAAGAGAACCTCAAGTACACCACTGAGGTCTgtctgtacgtgtgtgtgtgtgtgt
>TCONS_00008371
ATGCAGGCGTTTCTGAAAGGTTCTTCCTCACAGAGTGTTAAAGCTCAGAagccttcatcatcatcatcctcggGTGGAGAGAAGAAGCAGAGAGCAGTGCCATGGGTGGAGAAATAcAGGCCCAAGTGTGTAGATGAAGTGGCGTTTCAGGAGGAGGTGGTGGCGGTGCTGAAGAAGTCTCTGGAAGGAGCAGACctgccGAATCTGCTGTTTTATGGGCCTCCAGGAACAGGAAAGACGTCCACCATCCTCGCTGCAGCCAGAGAGCTTTATGGgccgGATCTGTACCGCCAGCGAGTGCTAGAGCTGAATGCATCTGATGAGCGTGGGATTCAGGTGGTCCGAGAGAAGGTGAAGCGCTTCGCCCAGCTGACGGTGGCTGGCACACGACCAGAtggtaAGACCTGTCCACCATTTAAGATCATCATCCTGGACGAGGCGGACTCTATGACCAGCGCAGCGCAGGCAGCTCTCCGCCGCACCATGGAGAAGGAGTCACGCACCACACGCTTCTGCCTCATCTGTAACTATGTCAGCCGATTATCCCATGCAGAATGTGCTGCCTTCTTCCCCATGTCAGTCTGCACTTCAGGAacacacagtaaataa
>TCONS_00008372
GTCACCTGCGCGTCTGGCGGGAATCTGAGGACCCGCGCAGTGTCAACAGATCGTCAGGAGTTTTATTCGagtttatttgaccaaaaaaagATTTATTGTGATTTACATCGATTATATTAAGAGATGCAGGCGTTTCTGAAAGGTTCTTCCTCACAGAGTGTTAAAGCTCAGAagccttcatcatcatcatcctcggGTGGAGAGAAGAAGCAGAGAGCAGTGCCATGGGTGGAGAAATAGCCCAAGTGTGTAGATGAAGTGGCGTTTCAGGAGGAGGTGGTGGCGGTGCTGAAGAAGTCTCTGGAAGGAGCAGACctgccGAATCTGCTGTTTTATGGGCCTCCAGGAACAGGAAAGACGTCCACCATCCTCGCTGCAGCCAGAGAGCTTTATGGgccgGATCTGTACCGCCAGCGAGTGCTAGAGCTGAATGCATCTGATGAGCGTGGGATTCAGGTGGTCCGAGAGAAGGTGAAGCGCTTCGCCCAGCTGACGGTGGCTGGCACACGACCAGAtggtaAGACCTGTCCACCATTTAAGATCATCATCCTGGACGAGGCGGACTCTATGACCAGCGCAGCGCAGGCAGCTCTCCGCCGCACCATGGAGAAGGAGTCACGCACCACACGCTTCTGCCT
>TCONS_00008373
GCGCGTCTGGCGGGAATCTGAGGACCCGCGCAGTGTCAACAGATCGTCAGGAGTTTTATTCGagtttatttgaccaaaaaaagATTTATTGTGATTTACATCGATTATATTAAGGTGTTCAGCGTGTACAATCAAGACttgctgcagtgtttgtAGATGCAGGCGTTTCTGAAAGGTTCTTCCTCACAGAGTGTTAAAGCTCAGAagccttcatcatcatcatcctcggGTGGAGAGAAGAAGCAGAGAGCAGTGCCATGGGTGGAGAAATAcAGGCCCAAGTGTGTAGATGAAGTGGCGTTTCA

Function

symbol description
rfc4 Predicted to enable ATP binding activity and DNA binding activity. Predicted to contribute to DNA clamp loader activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; immature eye; and nervous system. Orthologous to human RFC4 (replication factor C subunit 4).

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005663 DNA replication factor C complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003689 DNA clamp loader activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040824-3 Predicted to enable ATP binding activity and DNA binding activity. Predicted to contribute to DNA clamp loader activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; immature eye; and nervous system. Orthologous to human RFC4 (replication factor C subunit 4).

Ensembl:

ensembl_id ENSDARG00000042458

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008366 False 441 mRNA 0.48 3 45426609 45429199
TCONS_00008367 False 1077 mRNA 0.53 13 45426758 45433419
TCONS_00008368 False 1622 mRNA 0.45 9 45429353 45434959
TCONS_00008369 False 809 mRNA 0.53 7 45430084 45435006
TCONS_00008370 False 811 mRNA 0.53 7 45430084 45435014
TCONS_00008371 False 609 mRNA 0.54 7 45430797 45433419
TCONS_00008372 False 638 nonsense_mediated_decay 0.53 6 45431533 45435014
TCONS_00008373 True 305 mRNA 0.46 4 45432624 45435007

Neighbor

gene id symbol gene type direction distance location
XLOC_004415 ankrd13c coding downstream 6275 45401608 ~ 45420334 (-)
XLOC_004414 trappc10 coding downstream 31007 45354838 ~ 45395602 (-)
XLOC_004413 notum1b coding downstream 178517 45244618 ~ 45248092 (-)
XLOC_004412 tmc8 coding downstream 209925 45199369 ~ 45216684 (-)
XLOC_004411 CR293511.1 coding downstream 227358 45187798 ~ 45199251 (-)
XLOC_004417 gemin6 coding upstream 33716 45468730 ~ 45470370 (-)
XLOC_004063 CR854846.1 misc downstream 29298931 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 32734918 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 32804842 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 32835313 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 32913347 12512966 ~ 12513262 (-)
XLOC_004401 NA non-coding downstream 568008 44852582 ~ 44858601 (-)
XLOC_004399 BX569779.1 non-coding downstream 670126 44750935 ~ 44756483 (-)
XLOC_004398 NA non-coding downstream 704278 44716828 ~ 44722331 (-)
XLOC_004395 NA non-coding downstream 822984 44601861 ~ 44603625 (-)
XLOC_004393 NA non-coding downstream 901679 44522806 ~ 44524930 (-)

Expression


Co-expression Network